Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01112 ATGCCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTCGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAACGTTATTACGACGAACAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCATAATAACGACAACGACAATGCAGATTCTCCTATGACGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTAATGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 46.39 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTNKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNDNDNADSPMTMAVVASDHQSPMAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPNEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23898441 23899221 - ClCG06G011180.1 Cla06g01112 275304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01112 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cla06g01112 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cla06g01112 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cla06g01112 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cla06g01112 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cla06g01112 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cla06g01112 216 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 201 - -
Cla06g01112 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Cla06g01112 216 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cla06g01112 216 PIRSF PTI6 2 123 IPR017392 GO:0003700
Cla06g01112 216 PIRSF PTI6 111 206 IPR017392 GO:0003700
Cla06g01112 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01112 Cla11g00279 CCT
Cla06g01112 Cla11g00279 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01112 Cla-Chr6:23898441 Cla09g00288 Cla-Chr9:2794654 1.03E-31 dispersed
Cla11g00279 Cla-Chr11:3216107 Cla06g01112 Cla-Chr6:23898441 4.95E-82 wgd
Cla05g01741 Cla-Chr5:29243958 Cla06g01112 Cla-Chr6:23898441 5.42E-52 wgd
Cla06g01112 Cla-Chr6:23898441 Cla07g01210 Cla-Chr7:29109838 4.47E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61288 PF00847 AP2 7.20E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01112 - - bhj:120071615 368.622