Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01118 ATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAGCTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGATGTGAGGACATCCTTGCCTCAGCGTATGTACTGTATATCATTAAAATGCTCTGAAGTAGGTCGTTCCATTCTTTTGGTACTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGGTGCCAACATCTACAATATATATCCAATGTATGAAATATGGGGTTTTATTTATTTATCTTTTCTTTTATGATATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGCTTGTGTTACTTGATCATGTTAGTATTTTACTTGTTTTTCATGCATATTTGTGCACTAAATTAATTCTCTCGCTCACGTCAGGATTTGTGATTTTGCAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGGTGCAACTGTTATTCTTCCCTCATGACGAATGCAAGTACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGGTAATCTCATAGACATAATAATTGATAATCCGAGGTTTAATAAAGAACTTAGAAACTTCGTATTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1587 40.58 MRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEAESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEDVRTSLPQRMYCISLKCSEVGRSILLVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKVPTSTIYIQCMKYGVLFIYLFFYDINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIELVLLDHVSILLVFHAYLCTKLILSLTSGFVILQEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKVQLLFFPHDECKYKVGKKDWTQGCTICCCAGGNLIDIIIDNPRFNKELRNFVFYKNFCAKLENIIWKPTESVGN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24015221 24020473 - ClCG06G011250.2 Cla06g01118 275310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01118 528 SUPERFAMILY Protein kinase-like (PK-like) 8 324 IPR011009 -
Cla06g01118 528 Gene3D Kinase associated domain 1, KA1 387 472 - -
Cla06g01118 528 ProSiteProfiles NAF domain profile. 388 412 IPR018451 GO:0007165
Cla06g01118 528 CDD CIPK_C 394 457 - -
Cla06g01118 528 ProSiteProfiles Protein kinase domain profile. 11 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01118 528 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 524 - -
Cla06g01118 528 PANTHER - 5 524 - -
Cla06g01118 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cla06g01118 528 Gene3D Transferase(Phosphotransferase) domain 1 3 344 - -
Cla06g01118 528 Pfam Protein kinase domain 11 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01118 528 Pfam Protein kinase domain 206 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01118 528 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Cla06g01118 528 Pfam NAF domain 390 448 IPR004041 GO:0007165
Cla06g01118 528 SMART serkin_6 11 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01118 Cla-Chr6:24015221 Cla08g01182 Cla-Chr8:24692033 4.66E-179 dispersed
Cla06g01118 Cla-Chr6:24015221 Cla03g00613 Cla-Chr3:7315854 1.89E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80638 PF00069 Pkinase 1.40E-51 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01118 - - pop:7470095 590.112