Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01118 | ATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAGCTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGATGTGAGGACATCCTTGCCTCAGCGTATGTACTGTATATCATTAAAATGCTCTGAAGTAGGTCGTTCCATTCTTTTGGTACTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGGTGCCAACATCTACAATATATATCCAATGTATGAAATATGGGGTTTTATTTATTTATCTTTTCTTTTATGATATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGCTTGTGTTACTTGATCATGTTAGTATTTTACTTGTTTTTCATGCATATTTGTGCACTAAATTAATTCTCTCGCTCACGTCAGGATTTGTGATTTTGCAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGGTGCAACTGTTATTCTTCCCTCATGACGAATGCAAGTACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGGTAATCTCATAGACATAATAATTGATAATCCGAGGTTTAATAAAGAACTTAGAAACTTCGTATTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA | 1587 | 40.58 | MRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEAESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEDVRTSLPQRMYCISLKCSEVGRSILLVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKVPTSTIYIQCMKYGVLFIYLFFYDINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIELVLLDHVSILLVFHAYLCTKLILSLTSGFVILQEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKVQLLFFPHDECKYKVGKKDWTQGCTICCCAGGNLIDIIIDNPRFNKELRNFVFYKNFCAKLENIIWKPTESVGN | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24015221 | 24020473 | - | ClCG06G011250.2 | Cla06g01118 | 275310 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01118 | 528 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 324 | IPR011009 | - | |
Cla06g01118 | 528 | Gene3D | Kinase associated domain 1, KA1 | 387 | 472 | - | - | |
Cla06g01118 | 528 | ProSiteProfiles | NAF domain profile. | 388 | 412 | IPR018451 | GO:0007165 | |
Cla06g01118 | 528 | CDD | CIPK_C | 394 | 457 | - | - | |
Cla06g01118 | 528 | ProSiteProfiles | Protein kinase domain profile. | 11 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01118 | 528 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 5 | 524 | - | - | |
Cla06g01118 | 528 | PANTHER | - | 5 | 524 | - | - | |
Cla06g01118 | 528 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Cla06g01118 | 528 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 344 | - | - | |
Cla06g01118 | 528 | Pfam | Protein kinase domain | 11 | 182 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01118 | 528 | Pfam | Protein kinase domain | 206 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01118 | 528 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 49 | IPR017441 | GO:0005524 | |
Cla06g01118 | 528 | Pfam | NAF domain | 390 | 448 | IPR004041 | GO:0007165 | |
Cla06g01118 | 528 | SMART | serkin_6 | 11 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g01118 | Cla-Chr6:24015221 | Cla08g01182 | Cla-Chr8:24692033 | 4.66E-179 | dispersed | |
Cla06g01118 | Cla-Chr6:24015221 | Cla03g00613 | Cla-Chr3:7315854 | 1.89E-151 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80638 | PF00069 | Pkinase | 1.40E-51 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01118 | - | - | pop:7470095 | 590.112 |