Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01123 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGTCAGGTCTCCATTGTTTTGGACCTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGCAATTTTACCTATAAATTTGTTTGAGAAGGAATTTGATGATGATGATGATGATAATGATGATAATGATGATGAGCAGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 717 40.86 MAASCIDIAPEQLCYIPCNFCNIVLASGLHCFGPFFSSSSSSSSSFAILPINLFEKEFDDDDDDNDDNDDEQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24074518 24078052 - ClCG06G011300.2 Cla06g01123 275315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01123 238 PANTHER PROTEIN YABBY 6-RELATED 73 229 IPR006780 GO:0007275
Cla06g01123 238 Pfam YABBY protein 73 212 IPR006780 GO:0007275
Cla06g01123 238 SUPERFAMILY HMG-box 154 205 IPR036910 -
Cla06g01123 238 PANTHER PROTEIN YABBY 6-RELATED 3 31 IPR006780 GO:0007275
Cla06g01123 238 PANTHER AXIAL REGULATOR YABBY 5 3 31 - -
Cla06g01123 238 Gene3D High mobility group box domain 151 207 IPR036910 -
Cla06g01123 238 PANTHER AXIAL REGULATOR YABBY 5 73 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01123 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101215951 342.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02184 Cla-Chr2:36970061 Cla06g01123 Cla-Chr6:24074518 9.06E-58 dispersed
Cla05g02399 Cla-Chr5:35548815 Cla06g01123 Cla-Chr6:24074518 2.11E-31 dispersed
Cla06g01123 Cla-Chr6:24074518 Cla08g01746 Cla-Chr8:29943203 2.13E-30 dispersed
Cla11g00285 Cla-Chr11:3276437 Cla06g01123 Cla-Chr6:24074518 3.18E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02399 . 12 167 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.9e-46 180.3
Cla01g00368 CCT 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.1e-42 169.1
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT1G08465 58.0 1.4e-50 196.4
Cla01g00368 CCT 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.6e-43 172.9
Cla11g00285 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.5e-41 164.1
Cla01g00368 CCT 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.5e-50 194.9
Cla05g02553 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 2.0e-39 159.8
Cla11g00285 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.4e-61 231.1
Cla06g01123 . 8 222 C2C2-YABBY Transcription Factor Family AT2G26580 55.8 4.3e-56 214.5
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.3e-44 176.4
Cla01g00368 CCT 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.4e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61289 PF04690 YABBY 2.70E-57 CL0114 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01123 Cla_Chr06 FPKM 7.514403 8.670832 8.223546 8.437044 13.50026 14.732558 13.662883 12.277618 13.45261 11.751619