Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01123 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGTCAGGTCTCCATTGTTTTGGACCTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGCAATTTTACCTATAAATTTGTTTGAGAAGGAATTTGATGATGATGATGATGATAATGATGATAATGATGATGAGCAGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 717 40.86 MAASCIDIAPEQLCYIPCNFCNIVLASGLHCFGPFFSSSSSSSSSFAILPINLFEKEFDDDDDDNDDNDDEQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24074518 24078052 - ClCG06G011300.2 Cla06g01123 275315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01123 238 PANTHER PROTEIN YABBY 6-RELATED 73 229 IPR006780 GO:0007275
Cla06g01123 238 Pfam YABBY protein 73 212 IPR006780 GO:0007275
Cla06g01123 238 SUPERFAMILY HMG-box 154 205 IPR036910 -
Cla06g01123 238 PANTHER PROTEIN YABBY 6-RELATED 3 31 IPR006780 GO:0007275
Cla06g01123 238 PANTHER AXIAL REGULATOR YABBY 5 3 31 - -
Cla06g01123 238 Gene3D High mobility group box domain 151 207 IPR036910 -
Cla06g01123 238 PANTHER AXIAL REGULATOR YABBY 5 73 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02184 Cla-Chr2:36970061 Cla06g01123 Cla-Chr6:24074518 9.06E-58 dispersed
Cla05g02399 Cla-Chr5:35548815 Cla06g01123 Cla-Chr6:24074518 2.11E-31 dispersed
Cla06g01123 Cla-Chr6:24074518 Cla08g01746 Cla-Chr8:29943203 2.13E-30 dispersed
Cla11g00285 Cla-Chr11:3276437 Cla06g01123 Cla-Chr6:24074518 3.18E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61289 PF04690 YABBY 2.70E-57 CL0114 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01123 K25796 - csv:101215951 342.813