Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01171 ATGGGCGTCACCATTCTTCCAGATCTCGGGGCTCAGATTTTCATTCCCCTTTGTGCTCTAGTCGGTATCCTCTTCTCTTTGGTGCAGTGGTACTACGTTTCACAAGTTAAGCTCTCTTCTTCCCGAGATTCCTCTAATAACAACTCCGCCGCTGCTAAAAATGGCTACTCCGACTACCTTATTGAGGAGGAAGAAGGTGTCAACGACCATAACGTTGTTATTAAATGTGCCGAAATTCAGAACGCCATCTCTGAGGGGGCAACCTCCTTCCTTTTCACGGAGTACTACTATGTTGGCATATTTATGGTATTGTTTGCAGTCTTGATTTTTGTATTCCTTGGGTCAGTGGAGGGTTTTAGTACCAAGCCCCAAGCGTGCTCATATGACAAAACAAAGACTTGCAAGCCAGCTTTGGCGACGGCTATATTCAGCACTGTATCATTTATACTTGGTGCAGTTACTTCAGTGGTTTCTGGATTCCTTGGAATGAAAATTGCTACATATGCAAATGCCAGAACCACCTTGGAGGCAAGAAAAGGTGTTGGAAAGGCATTTATTACTGCTTTTAGGTCTGGTGCTGTCATGGGCTTCCTCCTAGCAGCCAATGGTCTCTTGGTTTTGTTTATTGCCATTAACCTCTTCAAATTGTACTATGGTGAAGATTGGGGTGGTCTTTTTGAGTCTATCACTGGGTATGGTCTTGGTGGATCTTCCATGGCTCTCTTTGGTAGAGTTGGTGGTGGTATCTACACTAAAGCTGCTGATGTTGGTGCTGACCTTGTGGGTAAGGTGGAAAGGAACATTCCTGAGGATGATCCAAGAAATCCAGCTGTGATTGCTGATAACGTCGGTGACAATGTTGGGGATATTGCTGGTATGGGATCTGATCTTTTTGGTTCATATGCTGAATCATCCTGTGCTGCTCTTGTTGTTGCTTCTATCTCCTCTTTCGGCAACAACCATGAGTTCACACCAATGCTCTATCCTCTCATAGTTAGTTCTATGGGTATCCTTGTTTGCCTGATCACCACTTTATTTGCAACTGATTTCTTTGAGATCAAGGCTGTTAAGGAAATTGAGCCAGCATTGAAGAAGCAACTCATAATTTCCACTGTTCTAATGACCTTTGGAATTGCAATTGTTACTTGGTTGGCTGTTCCATCGAAATTTACCATCTTCAATTTTGGAACTCAAAAAGTTGTACAGAACTGGTTAGTGGAACTTTTCTTGTGCGTTGCTGTTGGTCTTTGGGCTGGGCTTATAATAGGATTTGTGACAGAGTATTACACTAGCAATGCATACAGCCCCGTGCAAGATGTTGCTGATTCTTGCCGAACTGGAGCTGCTACAAATGTTATTTTTGGCTTGGCCTTGGGATACAAATCTGTCATTATCCCTATTTTTGCAATTGCAGTTAGCATTTTTGTGAGTTTCTCCTTTGCTGCAATGTATGGCATTGCCGTTGCTGCCCTTGGAATGTTGAGTACAATTGCTACTGGTTTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGCATTGCAGAGATGGCTGGCATGAGCCACAGAATTCGGGAGAGAACCGATGCCCTCGATGCTGCTGGAAACACAACTGCAGCCATTGGAAAGGGTTTTGCCATTGGCTCAGCTGCTCTTGTGTCCCTTGCCCTCTTCGGTGCCTTTGTCAGCCGTGCTGGTGTCAGTGTTGTTGACGTCTTGACACCCAAAGTTTTCATTGGCTTGATCGTGGGTGCTATGTTGCCCTACTGGTTTTCTGCCATGACAATGAAGAGTGTTGGGAGTGCAGCCCTAAAGATGGTTGAGGAGGTGCGAAGGCAATTTAACACCATCCCAGGTCTCATGGAGGGTACCGCCAAGCCCGACTATGCTACATGTGTCAAGATCTCAACTGATGCTTCTATCAAGGAGATGATCCCACCAGGTGCCCTTGTCATGTTGACACCCCTAATTGTTGGTATCCTATTTGGAGTCGAAACTCTTTCTGGCGTTCTTGCTGGATCCCTTGTTTCTGGTGTGCAGATTGCTATCTCTGCATCCAACACCGGAGGTGCCTGGGACAATGCTAAGAAGTACATCGAGGCTGGTGCCTCTGAGCATGCAAGAACCCTTGGCCCGAAAGGATCAGATCCACACAAAGCCGCTGTTATCGGTGACACAATCGGAGACCCACTCAAGGATACATCGGGACCTTCCCTCAACATTCTTATCAAGTTGATGGCTGTTGAGTCCCTTGTGTTTGCTCCTTTCTTCGCCAGCCACGGTGGTATTCTCTTCAAGATCTTCTAA 2313 45.78 MGVTILPDLGAQIFIPLCALVGILFSLVQWYYVSQVKLSSSRDSSNNNSAAAKNGYSDYLIEEEEGVNDHNVVIKCAEIQNAISEGATSFLFTEYYYVGIFMVLFAVLIFVFLGSVEGFSTKPQACSYDKTKTCKPALATAIFSTVSFILGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGEDWGGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNNHEFTPMLYPLIVSSMGILVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTFGIAIVTWLAVPSKFTIFNFGTQKVVQNWLVELFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGVSVVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFASHGGILFKIF 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24855454 24860432 + ClCG06G011780.2 Cla06g01171 275363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01171 770 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 760 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla06g01171 770 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 1 770 - -
Cla06g01171 770 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 770 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla06g01171 770 PIRSF H+-PPtase 12 768 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla06g01171 770 Pfam Inorganic H+ pyrophosphatase 24 755 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla06g01171 770 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 12 765 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01484 Cla-Chr2:29357671 Cla06g01171 Cla-Chr6:24855454 0 dispersed
Cla06g01171 Cla-Chr6:24855454 Cla09g00159 Cla-Chr9:1640183 8.13E-139 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01171 K23025 - csv:101222673 1438.32