Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01196 ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACCCCGGTCGCTTCTACTGGTCGAAACCCGCAAAGGTTTACCCCCCAGCATCCCTGCGACGTTGCCAGTGCAGACACTGTGCCCGTTCCTGGTAAGGGGAACGTCTCTGATATAGGATTTGTTGAGCTAGGATATCGAAATGTGGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCTTTACACATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTGATCTGAATGTCATGGGCAATCGTGGTGGTGCCAATGCTGTTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTCGAGTCATCGATTTGGGGGAGGTGGCTTGGAATCTGTGAGCAATAATATCTCAATGGGGTCTGGAGATAGTGCCAATTTATGCAATAAGGTAACTGCCAATGGTGATCAGATTAATAGTGATAGTACTTCTGGTTTTAGCTCCCACTTGAGGAATTCGGTTGATGGGAGTGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGACCAAGTGATGGGATGTTGAGATACATTGGAGGGCAAACAAGGATTATAAGTGTTAGGAGAGACGTGACTTTCAATGAGCTTGTACGAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGACGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGATCTTCAGAAGGATCGGCTAAATTGAGGATGTTTCTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGGGATGTTTGATGGCGTTGGTGGCTGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAAAATTCTGACTTAAGTGGGATGGAGGCGATGGATATCGCAAATAATGATCTAGGGGGGGTTGTGAGTGGGCCTCCATCCTCAACACTGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTAGTGAAAGTAGATCCTGTCTCTGCAGTTTTTGTAGACGCCTCAGCTGTTCCATCAAGTATTCCTGTGCTTAACTCTGTTCCTCCTGAAGCTTCTTCGCAGCCTGAGGTGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTGTTGACTTTCCTCCACCTGTGTCTCAATTGCAGCCTACTGGTGATCCTCGGCAAGCAGCGTGTGTGGACTTTGTACAATTTCGTCCACAACTTGGCTTTTCAAACTCCCATCATTTAGGGGCATCTGGGTCTATGTTTATACAACAGCCAAATACTCTTGGAATTACCCCTAATCAGTTTGTCCCTGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCTCAGTACTATGCTAAATACCTATCAATCGTTGGTTCAATATCCACGATCCCAGATGGATTATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACGCCAGGTTCCAGCTCCTCCAGTATCAGTAGGGGTTGGGTTTGGTTTACATCAGGTACCACAGTCTGATCAGACAGTTACGTCTGATGAATTGGTATCCCATCATCGGGCAACTTTTTCTGAGAAGATCGAGAGGTTGGATGGCTGTTACTTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACCCTGTATCTGATTCAAAGTTTTCATATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCAATGAAAAATATTACAGAAACTGGAGCTTTGAGGCAACAAACTACTGAACATGGTGTTGGAATGCAAACCAGGATCTTTAATCCCATGGATCCAGAAGTTGAAAAACCTTCAGTGGAAGCTATTAGCTTCCCACATCGTATTGAGGGTCAACATGAGAATGACAACACTCTTAAAGATCAGCATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGCTCTTGGGAGGCAAGGTGATATTCAGTCACCCCATGTTGCTGTTGTAGAACAGATTTGTCAGTCTGGCGAAGTTGATACTCTCCAGCACCACTATGTAGCTGTAGAGAATCAGTTCCGTCCAAATTTAGTCCTGGATAAACACGATGTTTGCTTTGTAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATCCAAATGAGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCCACCCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTCAAGTATATGCCCAACTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAGAGAACTAGGAAGGAGGACAATTTTGGCAGCTGTTCACAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATGGTGGTTCTCGACCCAAATAACGTAAAGCCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAATGAACGACCTGTTGAGTCCAGTGAAGTGGCACAACCTCCTGTCAGGGGCTCTCCCGGAACATTACCACAAGCTGAAAATGGGATGCAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATGAAGACTGAACATATAAACAATGGAGTCCCTGATTCTTCTGAGTGGAAGGAGGACACTTCTCTATTGGAAACTAGGATGGTATCTGGTGATGTTGAATCTGTTTCTTTGCCTATCAGGACTGGAAATATGCAGGACACTGCAAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTGCAGCATGATACTCATTTTTTGCCGCCTAGACCAACTAAAATTCAACCGAGGAATGAAGCCCTTGCCTCCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACCAAATGTAGAAACAATTCTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAGCAAGGGTTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCGGCTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATCCAGTTTGTGAAACTATCACCGAAGGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGAAAAACCAAACTTTGGTTTTCCAATGTCAGAAGGATTTGGCCGCTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTAGGTTCTGGCACTTTTGGCACTGTTTATCATGGAAAATGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAACCATCTGAACAAGATCGCATGAGAGAGGACTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTATGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAACGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGACAAGCGTAAGCGTCTCTTGATTGCTATGGATGCAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGTGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTCTCCTTTGGTATTGTCTTGTGGGAGCTCCTCACTGGTGAAGAGCCCTACGCAAATTTGCATTATGGGATTATCATAGGTGGCATAGTAAGCAACACGTTGCGACCTGAAGTTCCAGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCTGAGCCGTCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGGTCCATGGCTACTAAGGTTCCTCCGAAAATACCCAACCATCCACAGTAG 4356 44.54 MAFDQNAIPTGLRPLNVARTLVEDPHLTPVASTGRNPQRFTPQHPCDVASADTVPVPGKGNVSDIGFVELGYRNVVAGVTAWCPRMPPPFTHTATIPAVGFGYCSDLNVMGNRGGANAVELASSCMTVGINHSTNSSHRFGGGGLESVSNNISMGSGDSANLCNKVTANGDQINSDSTSGFSSHLRNSVDGSAVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFNELVRKMVDTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSEGSAKLRMFLFSASELDSSGMVQFGDLHDSGQRYVETVNGMFDGVGGCITRKESFASATSTQNSDLSGMEAMDIANNDLGGVVSGPPSSTLSLPGGNLGTAVAIGPGLVKVDPVSAVFVDASAVPSSIPVLNSVPPEASSQPEVELGRSVPVTLMQQQPGVDFPPPVSQLQPTGDPRQAACVDFVQFRPQLGFSNSHHLGASGSMFIQQPNTLGITPNQFVPAVHMTMAPSSSHLSTMLNTYQSLVQYPRSQMDYFSNASTFGPRFVQLSAEQGYNSRQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHRATFSEKIERLDGCYFCQKAVPHAHSNSPLQDQRENLTNPVSDSKFSYYSHHPEDHLTAHPMKNITETGALRQQTTEHGVGMQTRIFNPMDPEVEKPSVEAISFPHRIEGQHENDNTLKDQHNLDHGRISALQGALGRQGDIQSPHVAVVEQICQSGEVDTLQHHYVAVENQFRPNLVLDKHDVCFVGAPILASEYNTHENPNEYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESSSICPTDICANLDHCKSPIERTRKEDNFGSCSQPVSEREVLLDNNFVKPMVVLDPNNVKPTTFACSSSEVPYLMNERPVESSEVAQPPVRGSPGTLPQAENGMQHLESNEVCHSRNPHLFDMKTEHINNGVPDSSEWKEDTSLLETRMVSGDVESVSLPIRTGNMQDTANSLFSNQDPWNLQHDTHFLPPRPTKIQPRNEALASREPLTESPFRNIGEPNVETILDDGVCHPLVNSSKGSSEEQIRKDLQAVAEGVAASVLQSAQSSSSELHERIDPVCETITEGDVQNNDDGRTRHSEKPNFGFPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMATKVPPKIPNHPQ 1451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25170058 25177791 + ClCG06G012040.1 Cla06g01196 275388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01196 1451 ProSitePatterns Protein kinases ATP-binding region signature. 1178 1209 IPR017441 GO:0005524
Cla06g01196 1451 SUPERFAMILY Protein kinase-like (PK-like) 1163 1433 IPR011009 -
Cla06g01196 1451 SUPERFAMILY CAD & PB1 domains 226 318 - -
Cla06g01196 1451 Pfam PB1 domain 230 313 IPR000270 GO:0005515
Cla06g01196 1451 Pfam Protein tyrosine and serine/threonine kinase 1173 1435 IPR001245 GO:0004672|GO:0006468
Cla06g01196 1451 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 166 1442 - -
Cla06g01196 1451 ProSiteProfiles Protein kinase domain profile. 1172 1436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01196 1451 CDD PB1_UP2 214 312 - -
Cla06g01196 1451 SMART serkin_6 1172 1438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01196 1451 Gene3D - 232 314 - -
Cla06g01196 1451 Gene3D Transferase(Phosphotransferase) domain 1 1260 1448 - -
Cla06g01196 1451 MobiDBLite consensus disorder prediction 1134 1154 - -
Cla06g01196 1451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1297 1309 IPR008271 GO:0004672|GO:0006468
Cla06g01196 1451 Gene3D Phosphorylase Kinase; domain 1 1165 1259 - -
Cla06g01196 1451 CDD STKc_MAP3K-like 1178 1435 - -
Cla06g01196 1451 PRINTS Tyrosine kinase catalytic domain signature 1254 1267 IPR001245 GO:0004672|GO:0006468
Cla06g01196 1451 PRINTS Tyrosine kinase catalytic domain signature 1291 1309 IPR001245 GO:0004672|GO:0006468
Cla06g01196 1451 PRINTS Tyrosine kinase catalytic domain signature 1362 1384 IPR001245 GO:0004672|GO:0006468
Cla06g01196 1451 PRINTS Tyrosine kinase catalytic domain signature 1406 1428 IPR001245 GO:0004672|GO:0006468
Cla06g01196 1451 PANTHER SERINE-THREONINE PROTEIN KINASE 166 1442 - -
Cla06g01196 1451 SMART PB1_new 225 314 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00369 Cla-Chr5:3357633 Cla06g01196 Cla-Chr6:25170058 5.50E-33 dispersed
Cla06g01196 Cla-Chr6:25170058 Cla11g01222 Cla-Chr11:25519905 4.93E-15 dispersed
Cla09g01612 Cla-Chr9:32323475 Cla06g01196 Cla-Chr6:25170058 3.51E-31 dispersed
Cla10g00670 Cla-Chr10:10273958 Cla06g01196 Cla-Chr6:25170058 4.91E-33 dispersed
Cla06g01196 Cla-Chr6:25170058 Cla04g00964 Cla-Chr4:24754951 2.63E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80642 PF07714 PK_Tyr_Ser-Thr 6.90E-60 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01196 - - csv:101203826 2441.77