Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01207 ATGGGGGACATTTCATTAGAAGATGTCAAGAATGAGAACATTGATCTAGAAAGAATTCCTGTTGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGGCTCCAAATTTTTGGCCCTAATAAGCTTGAAGAGAAGAAAGAGAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAACCCTCTTTCATGGGTCATGGAATCTGCGGCAATCATGGCCATTGTCTTGGCCAATGGAGGGGGGAAACCACCAGATTGGCAAGATTTTGTTGGTATCATTGTCTTGTTGATCATCAACTCTACCATCAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCCAAAACCAAGGTCCTAAGAGATGGAAAATGGAAAGAAGAGGAGGCAGCAATTCTAGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCTGATGCACGTCTCTTAGAAGGCGATCCTCTTAAGATTGATCAATCTGCTCTTACAGGTGAATCTTTGCCAGTCACCAAGCATCCTGGTGATGAAGTGTTCTCTGGCTCCACTTGCAAGCAAGGTGAGATTGAGGCCGTAGTTATTGCCACTGGTGTGCATACTTTCTTTGGAAAGGCAGCTCACCTTGTGGATAGCACCAACCAAATTGGTCATTTCCAAAAGGTAAAAGGAAGTCTTCTTCAATTCCTGCTTAATCAAGGTAACTTGGGATTCATGGCAAGATTTGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGATAGGGATGATCATTGAGATCTTGGTAATGTATCCAATCCAGCATAGGGCATACAGAGAGGGAATTGACAACTTGTTGGTGCTCCTCATTGGAGGTATTCCCATTGCAATGCCAACAGTTCTGTCAGTAACAATGGCCATCGGATCGCATCGCCTTTCACAACAAGGTGCCATTACTAAGAGGATGACTGCAATTGAAGAGATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTCAACAAGCTCACTGTCGACAAGTCCTTGATTGAGGTGTTTGTGCCAAACATGGACAAAGACACTGTTATGTTGTTTGCTGCAAGAGCTTCTAGAGTTGAAAATCAAGATGCCATTGATGCATGTATTGTTGGAATGTTGGGTGACCCTAAAGAGGCAAGAGCAGGAATAACTGAAGTACATTTCTTGCCTTTCAATCCTGTTGATAAACGTACCGCCATTACCTACATTGACAGAGATGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAAAGGAGAAATAAGAAAGAAAGCTCATGACATTATTGATAACTATGCTAACCGCGGTCTTCGTTCCTTGGCAGTTGGTCGACAGACTGTTAAAGATAAGGACAAGGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATTCGCCGAGCTCTTGAACTCGGTGTTAATGTTAAGATGATCACAGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGCATGGGCACTAACATGTATCCATCATCGTCTTTGCTCGGCCAATGCAAGGATGAGTCAATTGCTTCCATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCTGAACACAAGTATGAGATCGTCAAGAAACTTCAGGAGAGGAATCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAAGGCCGACATCGGTATTGCTGTGGCTGATGCAACCGATGCAGCAAGAAGTGCTTCAGACATTGTCTTGACAGAGCCAGGGCTAAGTGTGATTGTGAGTGCTGTATTGACCAGTAGGGCCATCTTTCAGAGAATGAAGAACTATACTATCTATGCAGTTTCCATTACAATTCGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTCGATTTCTCACCTTTTATGGTCTTGATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGGGTCAAGCCATCACCAGTGCCAGACTCATGGAAACTCAAAGAAATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCCTCATGACCGTCTTTTTCTTTTGGCTTGCCAACGAAACCAACTTCTTCACGAACACATTTGGTGTAAAGCCACTCAAAGATCTTGCTGAGATCAATTCTGCTCTTTATCTTCAAGTGAGCATCATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCTTTTGTTGAATGCCCTGGTCTCTTGTTAGTTATTGCCTTCATTGCTGCACAGTTGGTTGCCACTTTAATTGCTGTATTTTCTGAATGGGACTTTGCAAGGATCAGAGGTATTGGATGGGGATGGGCAGGAGCTATCTGGGTATTCAGTATTGTTACTTACTTCCCACTAGATGTTCTCAAATTCGGAATTCGATACGCTCTTAGCGGCAAGGCTTGGGACAACATGCTCGAGAATAAGACGGCGTTTACGACTAAGAAGGATTATGGAAAAGGCGAAAGAGAGGCACAATGGGCAATAGCACAACGTACAATGCACGGACTACAACCACCAGAAACCATATTTCATGAAAAGAGCAACTATGAAGAGCTTTCAGAGATTGCAGAGCAAGCCAAGAAAAGGGCTGAAGTTGCTAGGTTGAGGGAACTTCACACTCTAAAGGGTCATGTGGAGTCAGTAGTGAAGTTGAAGGGATTGGACATTGAGACTATCCAACAACACTACACTGTTTAA 2910 43.85 MGDISLEDVKNENIDLERIPVEEVFEQLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQIGHFQKVKGSLLQFLLNQGNLGFMARFVLTAIGNFCICSIAIGMIIEILVMYPIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDTVMLFAARASRVENQDAIDACIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDRDGNWHRSSKGAPEQIIDLCELKGEIRKKAHDIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTVFFFWLANETNFFTNTFGVKPLKDLAEINSALYLQVSIISQALIFVTRSRSWSFVECPGLLLVIAFIAAQLVATLIAVFSEWDFARIRGIGWGWAGAIWVFSIVTYFPLDVLKFGIRYALSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTMHGLQPPETIFHEKSNYEELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25250358 25255041 - ClCG06G012130.1 Cla06g01207 275399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01207 969 CDD P-type_ATPase_H 34 861 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla06g01207 969 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cla06g01207 969 Gene3D - 94 835 - -
Cla06g01207 969 SFLD C1.7: P-type atpase like 332 661 - -
Cla06g01207 969 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cla06g01207 969 PRINTS H+-transporting ATPase (proton pump) signature 780 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 PRINTS H+-transporting ATPase (proton pump) signature 466 484 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 PRINTS H+-transporting ATPase (proton pump) signature 609 625 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 PRINTS H+-transporting ATPase (proton pump) signature 640 665 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 PRINTS H+-transporting ATPase (proton pump) signature 581 597 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 PANTHER CALCIUM-TRANSPORTING ATPASE 1 949 - -
Cla06g01207 969 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 224 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 584 696 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01207 969 ProSitePatterns E1-E2 ATPases phosphorylation site. 352 358 IPR018303 -
Cla06g01207 969 Gene3D - 347 646 IPR023214 -
Cla06g01207 969 Gene3D - 918 969 - -
Cla06g01207 969 Gene3D - 362 509 IPR023299 GO:0000166
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 526 536 - -
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 632 644 - -
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 504 515 - -
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Cla06g01207 969 PRINTS P-type cation-transporting ATPase superfamily signature 350 364 - -
Cla06g01207 969 Coils Coil 917 940 - -
Cla06g01207 969 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Cla06g01207 969 SUPERFAMILY HAD-like 346 656 IPR036412 -
Cla06g01207 969 Pfam E1-E2 ATPase 131 329 - -
Cla06g01207 969 SFLD p-type atpase 332 661 IPR044492 -
Cla06g01207 969 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 826 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla06g01207 969 Gene3D - 132 216 - -
Cla06g01207 969 Pfam haloacid dehalogenase-like hydrolase 346 623 - -
Cla06g01207 969 PANTHER PLASMA MEMBRANE ATPASE 1 949 - -
Cla06g01207 969 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 867 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01207 Cla-Chr6:25250358 Cla07g01180 Cla-Chr7:28794418 0 dispersed
Cla06g01207 Cla-Chr6:25250358 Cla11g01171 Cla-Chr11:24491447 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01207 K01535 - csv:101214655 1776.91