Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01213 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGACGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCACTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACAAAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATAATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTGTTTGA 2097 43.73 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQQSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSIMKREQNEIPEMNGEFGFDHFSLGSCV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25304932 25310297 + ClCG06G012200.2 Cla06g01213 275405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01213 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Cla06g01213 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cla06g01213 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cla06g01213 698 Gene3D - 24 182 - -
Cla06g01213 698 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Cla06g01213 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cla06g01213 698 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cla06g01213 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cla06g01213 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Cla06g01213 698 MobiDBLite consensus disorder prediction 147 208 - -
Cla06g01213 698 SMART REC_2 24 136 IPR001789 GO:0000160
Cla06g01213 698 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cla06g01213 698 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cla06g01213 698 CDD REC_typeB_ARR-like 26 140 - -
Cla06g01213 698 MobiDBLite consensus disorder prediction 157 178 - -
Cla06g01213 698 Gene3D - 207 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00580 Cla-Chr1:6534986 Cla06g01213 Cla-Chr6:25304932 4.09E-34 dispersed
Cla05g00848 Cla-Chr5:8379678 Cla06g01213 Cla-Chr6:25304932 6.78E-51 dispersed
Cla05g02268 Cla-Chr5:34338331 Cla06g01213 Cla-Chr6:25304932 2.37E-22 dispersed
Cla06g00448 Cla-Chr6:5465586 Cla06g01213 Cla-Chr6:25304932 1.38E-100 dispersed
Cla06g01213 Cla-Chr6:25304932 Cla11g00324 Cla-Chr11:3670474 0 dispersed
Cla09g00503 Cla-Chr9:4755266 Cla06g01213 Cla-Chr6:25304932 5.56E-16 dispersed
Cla09g01170 Cla-Chr9:13961074 Cla06g01213 Cla-Chr6:25304932 8.69E-16 dispersed
Cla10g00185 Cla-Chr10:2111246 Cla06g01213 Cla-Chr6:25304932 2.52E-14 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla06g01213 Cla-Chr6:25304932 1.04E-22 transposed
Cla05g01695 Cla-Chr5:28690664 Cla06g01213 Cla-Chr6:25304932 2.46E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61291 PF00072 Response_reg 1.70E-25 CL0304 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01213 K14491 - csv:101213687 1254.97