Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01213 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGACGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCACTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACAAAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATAATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTGTTTGA 2097 43.73 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQQSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSIMKREQNEIPEMNGEFGFDHFSLGSCV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25304932 25310297 + ClCG06G012200.2 Cla06g01213 275405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01213 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Cla06g01213 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cla06g01213 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cla06g01213 698 Gene3D - 24 182 - -
Cla06g01213 698 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Cla06g01213 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cla06g01213 698 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cla06g01213 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cla06g01213 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Cla06g01213 698 MobiDBLite consensus disorder prediction 147 208 - -
Cla06g01213 698 SMART REC_2 24 136 IPR001789 GO:0000160
Cla06g01213 698 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cla06g01213 698 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cla06g01213 698 CDD REC_typeB_ARR-like 26 140 - -
Cla06g01213 698 MobiDBLite consensus disorder prediction 157 178 - -
Cla06g01213 698 Gene3D - 207 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01213 K14491 ARR-B; two-component response regulator ARR-B family - csv:101213687 1254.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00580 Cla-Chr1:6534986 Cla06g01213 Cla-Chr6:25304932 4.09E-34 dispersed
Cla05g00848 Cla-Chr5:8379678 Cla06g01213 Cla-Chr6:25304932 6.78E-51 dispersed
Cla05g02268 Cla-Chr5:34338331 Cla06g01213 Cla-Chr6:25304932 2.37E-22 dispersed
Cla06g00448 Cla-Chr6:5465586 Cla06g01213 Cla-Chr6:25304932 1.38E-100 dispersed
Cla06g01213 Cla-Chr6:25304932 Cla11g00324 Cla-Chr11:3670474 0 dispersed
Cla09g00503 Cla-Chr9:4755266 Cla06g01213 Cla-Chr6:25304932 5.56E-16 dispersed
Cla09g01170 Cla-Chr9:13961074 Cla06g01213 Cla-Chr6:25304932 8.69E-16 dispersed
Cla10g00185 Cla-Chr10:2111246 Cla06g01213 Cla-Chr6:25304932 2.52E-14 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla06g01213 Cla-Chr6:25304932 1.04E-22 transposed
Cla05g01695 Cla-Chr5:28690664 Cla06g01213 Cla-Chr6:25304932 2.46E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g640 Blo01g00600 Blo16g00870 Bda01g01967 Bda11g00074 Bpe01g00636 Bpe02g02148 Bma07g00742 . Cmo10g00516 Cmo11g00476 . . . . Sed11g0169 Cpe04g01239 Cpe18g00551 Bhi02g00898 Tan09g1542 Cmetu02g1717 . . . . . . . . . . . Cone2ag0549 Cone16ag0459 Cone4ag0611 . Lsi06g01039 . . Cme02g01081 Blo08g00530 . Bda02g00326 Bda09g00841 Bpe08g00654 Bpe13g01134 Bma01g00295 Bma06g00994 . . . Cma10g00483 . Car10g00447 . . . . . . . . . . Cla06g01213 Cam06g1357 Cec06g1400 Cco06g1405 Clacu06g1305 Cmu06g1276 Cre06g2086 . Csa01g01861 Chy02g02099 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G59940 59.9 2.5e-44 176.4
Cla01g00731 . 5 152 Response Regulator Gene Family AT1G59940 58.8 1.7e-40 163.7
Cla04g00444 CCT 11 154 Response Regulator Gene Family AT1G59940 56.3 9.4e-39 157.9
Cla07g00490 . 18 153 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Cla10g01535 CCT 8 162 Response Regulator Gene Family AT1G59940 53.5 5.1e-37 152.1
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G10470 61.1 1.6e-43 173.3
Cla01g00731 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.1e-39 160.6
Cla04g00444 CCT 17 168 Response Regulator Gene Family AT1G10470 56.9 1.2e-38 157.1
Cla10g01535 CCT 10 170 Response Regulator Gene Family AT1G10470 53.4 7.9e-38 154.5
Cla07g00490 . 23 153 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 28 182 Response Regulator Gene Family AT5G62920 67.1 1.4e-47 186.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT5G62920 61.0 1.7e-40 162.9
Cla04g00444 CCT 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cla10g01535 CCT 10 164 Response Regulator Gene Family AT5G62920 52.9 5.1e-37 151.4
Cla06g01631 . 29 198 Response Regulator Gene Family AT1G19050 64.7 6.4e-49 191.0
Cla04g00444 CCT 11 156 Response Regulator Gene Family AT1G19050 54.8 3.0e-38 155.6
Cla01g00731 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cla07g00490 . 23 154 Response Regulator Gene Family AT1G19050 60.6 1.9e-37 152.9
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT2G41310 54.1 1.1e-59 226.9
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT2G41310 68.5 4.7e-53 204.9
Cla01g00731 . 1 153 Response Regulator Gene Family AT2G41310 64.3 9.1e-49 190.7
Cla08g00600 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.7e-43 170.6
Cla07g00490 . 17 154 Response Regulator Gene Family AT2G41310 55.6 5.9e-40 161.4
Cla06g01631 . 31 178 Response Regulator Gene Family AT2G41310 55.5 4.2e-38 155.2
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT3G57040 53.1 3.0e-63 238.8
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT3G57040 70.9 2.6e-54 209.1
Cla01g00731 . 8 153 Response Regulator Gene Family AT3G57040 67.1 3.8e-50 195.3
Cla08g00600 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.0e-43 172.9
Cla07g00490 . 20 154 Response Regulator Gene Family AT3G57040 56.7 4.0e-39 158.7
Cla06g01631 . 28 187 Response Regulator Gene Family AT3G57040 52.7 2.6e-38 156.0
Cla06g01631 . 26 198 Response Regulator Gene Family AT1G74890 64.4 7.5e-50 194.1
Cla04g00444 CCT 12 172 Response Regulator Gene Family AT1G74890 52.1 2.7e-39 159.1
Cla01g00731 . 11 146 Response Regulator Gene Family AT1G74890 60.3 6.0e-39 157.9
Cla07g00490 . 23 150 Response Regulator Gene Family AT1G74890 60.2 5.6e-37 151.4
Cla07g00490 . 23 155 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT2G40670 52.8 1.6e-39 159.5
Cla06g01631 . 32 179 Response Regulator Gene Family AT2G40670 54.7 3.4e-37 151.8
Cla04g00444 CCT 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 150.6
Cla07g00490 . 5 155 Response Regulator Gene Family AT3G56380 66.4 6.9e-48 187.2
Cla06g01631 . 18 179 Response Regulator Gene Family AT3G56380 53.1 5.9e-39 157.5
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT3G56380 50.9 2.2e-38 155.6
Cla01g00731 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.9e-37 152.5
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla04g01184 . 567 1114 Response Regulator Gene Family AT5G61380 50.8 2.5e-141 499.6
Cla04g00859 . 38 205 Response Regulator Gene Family AT5G60100 68.0 5.9e-54 208.8
Cla01g00008 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.2e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003972 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61291 PF00072 Response_reg 1.70E-25 CL0304 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01213 Cla_Chr06 FPKM 26.536276 31.649836 26.616543 26.138235 13.6564 9.695481 11.745784 29.157539 33.974632 37.777836