Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01221 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCTCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCATTTCGATCCCGCCTCCGCCGCTTCCCACGACGACTTTCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTGATTGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA | 1269 | 55.63 | MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPASAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVIGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP | 422 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 25394004 | 25397360 | + | ClCG06G012270.1 | Cla06g01221 | 275413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 169 | 220 | - | - | |
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 173 | 212 | - | - | |
| Cla06g01221 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 51 | 378 | - | - | |
| Cla06g01221 | 422 | SMART | finulus | 223 | 272 | IPR011598 | GO:0046983 | |
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 28 | 55 | - | - | |
| Cla06g01221 | 422 | Pfam | Helix-loop-helix DNA-binding domain | 222 | 267 | IPR011598 | GO:0046983 | |
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 381 | 422 | - | - | |
| Cla06g01221 | 422 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 215 | 277 | IPR036638 | GO:0046983 | |
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 295 | 330 | - | - | |
| Cla06g01221 | 422 | Gene3D | - | 211 | 274 | IPR036638 | GO:0046983 | |
| Cla06g01221 | 422 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 217 | 266 | IPR011598 | GO:0046983 | |
| Cla06g01221 | 422 | MobiDBLite | consensus disorder prediction | 304 | 330 | - | - | |
| Cla06g01221 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 51 | 378 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g01221 | Cla-Chr6:25394004 | Cla05g02655 | Cla-Chr5:37753717 | 1.85E-22 | dispersed | |
| Cla09g00879 | Cla-Chr9:8966955 | Cla06g01221 | Cla-Chr6:25394004 | 2.39E-15 | dispersed | |
| Cla10g00998 | Cla-Chr10:23287766 | Cla06g01221 | Cla-Chr6:25394004 | 1.26E-19 | dispersed | |
| Cla02g01677 | Cla-Chr2:31633744 | Cla06g01221 | Cla-Chr6:25394004 | 3.26E-86 | transposed | |
| Cla03g01286 | Cla-Chr3:27516070 | Cla06g01221 | Cla-Chr6:25394004 | 2.61E-16 | transposed | |
| Cla03g01576 | Cla-Chr3:31538515 | Cla06g01221 | Cla-Chr6:25394004 | 3.17E-64 | transposed | |
| Cla07g00021 | Cla-Chr7:250832 | Cla06g01221 | Cla-Chr6:25394004 | 2.61E-19 | transposed | |
| Cla07g01594 | Cla-Chr7:33244503 | Cla06g01221 | Cla-Chr6:25394004 | 9.07E-14 | transposed | |
| Cla08g00027 | Cla-Chr8:821925 | Cla06g01221 | Cla-Chr6:25394004 | 3.00E-18 | transposed | |
| Cla09g00400 | Cla-Chr9:3853028 | Cla06g01221 | Cla-Chr6:25394004 | 2.04E-16 | transposed | |
| Cla09g00695 | Cla-Chr9:6741355 | Cla06g01221 | Cla-Chr6:25394004 | 8.42E-63 | transposed | |
| Cla10g01649 | Cla-Chr10:32151425 | Cla06g01221 | Cla-Chr6:25394004 | 1.34E-18 | transposed | |
| Cla02g01446 | Cla-Chr2:29000714 | Cla06g01221 | Cla-Chr6:25394004 | 3.86E-19 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61292 | PF00010 | HLH | 1.60E-09 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01221 | - | - | csv:101211609 | 718.383 |