Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01223 ATGACATTAGACAATTTTATAATTAGTAACTGTTCACAAAATCTAATCCTCCATCTTTTTGGTTGGTCTTTTCTCAGAACCATCATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGATACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTACAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCACCTACGCACGTAGACGATGAATTAAAAGATGATCACGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1104 40.76 MTLDNFIISNCSQNLILHLFGWSFLRTIMKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSTTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPTHVDDELKDDHEVKGFKLFGVHIK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25468459 25470467 + ClCG06G012290.2 Cla06g01223 275415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01223 367 Gene3D - 190 316 IPR015300 -
Cla06g01223 367 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 SMART B3_2 195 310 IPR003340 GO:0003677
Cla06g01223 367 ProSiteProfiles B3 DNA-binding domain profile. 195 310 IPR003340 GO:0003677
Cla06g01223 367 Pfam B3 DNA binding domain 195 294 IPR003340 GO:0003677
Cla06g01223 367 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 CDD B3_DNA 194 306 IPR003340 GO:0003677
Cla06g01223 367 SUPERFAMILY DNA-binding pseudobarrel domain 194 294 IPR015300 -
Cla06g01223 367 PANTHER DNA-BINDING PROTEIN RAV1 29 366 - -
Cla06g01223 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 366 IPR044800 GO:0003700
Cla06g01223 367 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Cla06g01223 367 Pfam AP2 domain 72 119 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01223 K09287 RAV; RAV-like factor - csv:101212246 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01321 Cla-Chr3:28238405 Cla06g01223 Cla-Chr6:25468459 2.91E-103 dispersed
Cla05g02328 Cla-Chr5:34860451 Cla06g01223 Cla-Chr6:25468459 9.67E-57 dispersed
Cla06g01223 Cla-Chr6:25468459 Cla10g01776 Cla-Chr10:33700239 1.14E-28 dispersed
Cla06g01223 Cla-Chr6:25468459 Cla01g00124 Cla-Chr1:1170541 4.31E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01776 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.7e-48 187.2
Cla06g00220 . 86 201 RAV Transcription Factor Family AT2G36080 68.9 5.7e-43 171.0
Cla07g00776 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.8e-40 160.6
Cla01g00124 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cla05g02328 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.3e-38 155.2
Cla01g00124 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cla06g00220 . 81 332 RAV Transcription Factor Family AT2G46870 50.2 3.8e-53 205.7
Cla07g00776 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.8e-51 198.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cla10g01776 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.5e-38 155.6
Cla10g01776 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.3e-44 174.9
Cla06g00220 . 88 208 RAV Transcription Factor Family AT3G11580 59.1 7.9e-40 161.0
Cla01g00124 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.7e-39 157.9
Cla07g00776 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.5e-38 156.8
Cla01g00124 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.4e-52 203.0
Cla06g00220 . 89 324 RAV Transcription Factor Family AT3G61970 50.2 4.1e-49 192.2
Cla07g00776 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 9.2e-49 191.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cla06g00220 . 62 201 RAV Transcription Factor Family AT4G01500 61.0 2.5e-42 169.9
Cla01g00124 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 7.1e-42 168.3
Cla07g00776 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.3e-38 155.2
Cla10g01776 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 2.0e-50 196.4
Cla06g00220 . 91 201 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cla01g00124 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cla05g02328 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.2e-37 151.4
Cla06g01223 . 73 367 RAV Transcription Factor Family AT1G50680 52.2 3.4e-84 308.9
Cla03g01321 CCT,ECH 47 323 RAV Transcription Factor Family AT1G50680 53.1 7.4e-79 291.2
Cla06g01223 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 1.6e-84 310.1
Cla03g01321 CCT,ECH 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.9e-77 286.6
Cla05g02328 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.5e-106 382.5
Cla03g00943 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cla01g00124 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.4e-38 154.8
Cla10g01776 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cla06g00220 . 87 201 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cla05g02328 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.8e-100 360.5
Cla03g00943 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.0e-88 323.9
Cla10g01776 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cla05g02328 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.4e-111 398.7
Cla03g00943 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.2e-93 338.6
Cla10g01776 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 1.0e-38 157.9
Cla01g00124 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cla06g00220 . 91 208 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cla05g02328 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.8e-100 360.5
Cla03g00943 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.0e-88 323.9
Cla10g01776 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cla06g01223 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 1.6e-84 310.1
Cla03g01321 CCT,ECH 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.9e-77 286.6
Cla10g01776 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.3e-44 174.9
Cla06g00220 . 88 208 RAV Transcription Factor Family AT3G11580 59.1 7.9e-40 161.0
Cla01g00124 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.7e-39 157.9
Cla07g00776 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.5e-38 156.8
Cla06g00220 . 62 201 RAV Transcription Factor Family AT4G01500 61.0 2.5e-42 169.9
Cla01g00124 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 7.1e-42 168.3
Cla07g00776 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.3e-38 155.2
Cla10g01776 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.7e-48 187.2
Cla06g00220 . 86 201 RAV Transcription Factor Family AT2G36080 68.9 5.7e-43 171.0
Cla07g00776 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.8e-40 160.6
Cla01g00124 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cla05g02328 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.3e-38 155.2
Cla10g01776 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 2.0e-50 196.4
Cla06g00220 . 91 201 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cla01g00124 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cla05g02328 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.2e-37 151.4
Cla01g00124 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cla06g00220 . 81 332 RAV Transcription Factor Family AT2G46870 50.2 3.8e-53 205.7
Cla07g00776 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.8e-51 198.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cla10g01776 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.5e-38 155.6
Cla06g01223 . 73 367 RAV Transcription Factor Family AT1G50680 52.2 3.4e-84 308.9
Cla03g01321 CCT,ECH 47 323 RAV Transcription Factor Family AT1G50680 53.1 7.4e-79 291.2
Cla01g00124 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.4e-52 203.0
Cla06g00220 . 89 324 RAV Transcription Factor Family AT3G61970 50.2 4.1e-49 192.2
Cla07g00776 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 9.2e-49 191.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cla05g02328 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.5e-106 382.5
Cla03g00943 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cla01g00124 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.4e-38 154.8
Cla10g01776 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cla06g00220 . 87 201 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cla05g02328 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.4e-111 398.7
Cla03g00943 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.2e-93 338.6
Cla10g01776 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 1.0e-38 157.9
Cla01g00124 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cla06g00220 . 91 208 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61293 PF02362 B3 9.90E-24 CL0405 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01223 Cla_Chr06 FPKM 0.172371 0.171157 0.428447 0.564435 1.119292 1.780172 1.415508 1.566653 1.544205 1.451217