Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01224 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCAGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCAAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAATGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTCTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAATGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTACGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 48.8 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25477279 25478571 - ClCG06G012300.1 Cla06g01224 275416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01224 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cla06g01224 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cla06g01224 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cla06g01224 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Cla06g01224 430 CDD STKc_SnRK3 16 270 - -
Cla06g01224 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cla06g01224 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01224 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01224 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cla06g01224 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01224 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cla06g01224 430 CDD CIPK_C 301 416 - -
Cla06g01224 430 PANTHER - 8 428 - -
Cla06g01224 430 Coils Coil 280 300 - -
Cla06g01224 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cla06g01224 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00654 Cla-Chr4:21052121 Cla06g01224 Cla-Chr6:25477279 3.96E-146 dispersed
Cla04g00656 Cla-Chr4:21159123 Cla06g01224 Cla-Chr6:25477279 0 dispersed
Cla06g01224 Cla-Chr6:25477279 Cla10g01232 Cla-Chr10:27067368 7.93E-175 dispersed
Cla02g01676 Cla-Chr2:31599010 Cla06g01224 Cla-Chr6:25477279 0 transposed
Cla06g01404 Cla-Chr6:27584718 Cla06g01224 Cla-Chr6:25477279 3.80E-23 transposed
Cla05g01685 Cla-Chr5:28525381 Cla06g01224 Cla-Chr6:25477279 2.07E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80643 PF00069 Pkinase 1.50E-73 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01224 - K07198 csv:101211847 832.017