Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01227 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCGAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCACCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAAGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTAAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACCATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGTGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCGCCAAATTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGCTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCCCGTACTCCAACTGCATCGCCACTTTCGTCTAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCATTGACCCTCTCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACAATACCATAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCTCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCTCCTCCTCCTCCTCCAATGGCCCTTGTTGATCCTAAGATTTCCTCTCCAGTCCCTCCACCACCACCACCTCTTCCTATGATGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATCTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGCTATAAAGGGACGGAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCACCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAAGGTCATGAATGCTGGCGATATTCCCTTTGATGTTTTATCCCGGTTGCCAACAAAGACTCTTCTTGAAATGAGATGCGTTTCAAAAGAGTGGTATCAACTTATTTCCGACCGATCATTTGTGCAAGCTCAATTCCAAAAGACTGGATTGACGTTATCAAGTTTCCTCTTTCAGGAGAAATACCAAAAATGCCTTGACGATATAAAAACATTCTGTTATATGCCAGTAAATGCAGATTCTAAGGTGCAGAAAATGGCCTTTGGTTTCCTGCCTGAGGATGTTGTTATTTTGGCATCCTGTAATGGCCTGGTTTGTTGTAGAAGTTGCTTCCCTACACAACACCCTACGACAATCTACGTCTGCAATCCCTTGTTTAAGAAGTGGGTGAGTTTTGAAGTAGCTCAGCTGGACAGGTTCAGCAACATTTCTTTAGCATTTGATCCCATACTGAACCCTGTAAACACTAAAACGAATTTCAAAATAGTTAGAATTCAGCAGTTGGAGAATGAGCAAGAGGAAATGTACTACACATTTGAAATATACTCTTCAGAAACAGGAACCTGGAACGAATCAAATGAAGTTTGTTATACAAATGGCAATTTGTTTAAGAACAAAGGCATTTATGCTAAAGGGGTCTTACATTGGCTTACTGATACGGATCAAATCCTTGCATTTGATACAGAGAAAGAACTATCTCTGTTGATTTCATCTCCAATTCCTGCCTTGGAATTTTTCATCAACGTTCCTGGAACATGCATTGGAGAATCCAAGGGCTTACTGCATTTCATCATGATCTGTGAAGATGGAATTATTGTATGGTGTCTGGATGACTATTTTGAGACAAAATGGACCCACAAACATTCAAAACAGCTCCAAGTGATTGAAGAAGAGAACCCAAAGATGTTTTTCAGGTTATACAAGAACATGCAACAGAAACTGATTGCAGGTATGGATCCATGGATGGATCCAATAGCATTTAAAGATGAGGTTTTATTGATGAGGGTGTATTCAACCTTCTATTTCTACCACACTGAAACAGGCAAGTTGGTGGAAGTCTGTAACGTTACCAGTTTGGGTCCAAACCCCTATGTCGATCCTTCAGCGATTCCTTATTCGTTGAGCTTGGTTCCATTGAACGTTTCTCTCTCACAATCTGATTCAAATAGCAACATAAACCCTGGCGAGAACTAG 5019 42.12 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELRSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDHNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNAAMASSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPRTPTASPLSSSNFSTLRPDRSSLTEEIEIYSKDQNQLSTIDPLLSVTSAVSSSTQPPPPPPPPPPSTPPLNNTIAVRVKASPPTPPPFPSTFASHPTIASLVPQPPPPPPPPLTSTVNRKISSPIPSPPPPPPPPPMALVDPKISSPVPPPPPPLPMMSKQVESTSTSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFTSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVKVMNAGDIPFDVLSRLPTKTLLEMRCVSKEWYQLISDRSFVQAQFQKTGLTLSSFLFQEKYQKCLDDIKTFCYMPVNADSKVQKMAFGFLPEDVVILASCNGLVCCRSCFPTQHPTTIYVCNPLFKKWVSFEVAQLDRFSNISLAFDPILNPVNTKTNFKIVRIQQLENEQEEMYYTFEIYSSETGTWNESNEVCYTNGNLFKNKGIYAKGVLHWLTDTDQILAFDTEKELSLLISSPIPALEFFINVPGTCIGESKGLLHFIMICEDGIIVWCLDDYFETKWTHKHSKQLQVIEEENPKMFFRLYKNMQQKLIAGMDPWMDPIAFKDEVLLMRVYSTFYFYHTETGKLVEVCNVTSLGPNPYVDPSAIPYSLSLVPLNVSLSQSDSNSNINPGEN 1672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25525775 25542121 - ClCG06G012330.2 Cla06g01227 275419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01227 1672 MobiDBLite consensus disorder prediction 432 464 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 617 858 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 478 499 - -
Cla06g01227 1672 SUPERFAMILY F-box domain 1284 1333 IPR036047 GO:0005515
Cla06g01227 1672 MobiDBLite consensus disorder prediction 826 858 - -
Cla06g01227 1672 SMART fbox_2 1284 1320 IPR001810 GO:0005515
Cla06g01227 1672 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cla06g01227 1672 Coils Coil 1229 1249 - -
Cla06g01227 1672 Gene3D - 200 340 - -
Cla06g01227 1672 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cla06g01227 1672 Pfam Formin Homology 2 Domain 862 1229 IPR015425 -
Cla06g01227 1672 Pfam F-box domain 1287 1316 IPR001810 GO:0005515
Cla06g01227 1672 ProSiteProfiles Formin homology-2 (FH2) domain profile. 855 1254 IPR015425 -
Cla06g01227 1672 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cla06g01227 1672 TIGRFAM F_box_assoc_1: F-box protein interaction domain 1374 1563 IPR017451 -
Cla06g01227 1672 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 760 808 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 669 684 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 555 588 - -
Cla06g01227 1672 Gene3D Formin, FH2 domain 854 1239 IPR042201 -
Cla06g01227 1672 SMART it6_source 855 1315 IPR015425 -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 622 639 - -
Cla06g01227 1672 SUPERFAMILY Formin homology 2 domain (FH2 domain) 764 1245 - -
Cla06g01227 1672 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 692 727 - -
Cla06g01227 1672 SMART PTEN_C2_2 197 337 IPR014020 -
Cla06g01227 1672 PRINTS Proline rich extensin signature 541 553 - -
Cla06g01227 1672 PRINTS Proline rich extensin signature 621 642 - -
Cla06g01227 1672 PRINTS Proline rich extensin signature 693 718 - -
Cla06g01227 1672 PRINTS Proline rich extensin signature 664 681 - -
Cla06g01227 1672 PANTHER FORMIN-J 1 1253 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 443 464 - -
Cla06g01227 1672 MobiDBLite consensus disorder prediction 541 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01181 Cla-Chr4:26995366 Cla06g01227 Cla-Chr6:25525775 2.39E-148 dispersed
Cla06g01227 Cla-Chr6:25525775 Cla07g00225 Cla-Chr7:2464641 2.97E-143 dispersed
Cla07g00863 Cla-Chr7:24017038 Cla06g01227 Cla-Chr6:25525775 4.23E-18 transposed
Cla10g01713 Cla-Chr10:32918726 Cla06g01227 Cla-Chr6:25525775 4.18E-08 transposed
Cla05g01683 Cla-Chr5:28487074 Cla06g01227 Cla-Chr6:25525775 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01227 - - csv:101221713 1989.93