Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01235 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAACCATTCGCAAAAATGGATACATCGTAATCAAGAACAGACCCTGCAAGGTCGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCCGAAGGCAAAGATCTTGTACTAACTGTCATGTCTGCCATGGGTGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA 483 45.55 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25603481 25606857 + ClCG06G012390.1 Cla06g01235 275427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01235 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cla06g01235 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla06g01235 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cla06g01235 160 CDD S1_eIF5A 86 156 - -
Cla06g01235 160 Gene3D - 86 159 IPR012340 -
Cla06g01235 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla06g01235 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla06g01235 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla06g01235 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla06g01235 160 Gene3D - 1 85 IPR014722 -
Cla06g01235 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cla06g01235 160 MobiDBLite consensus disorder prediction 1 21 - -
Cla06g01235 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02413 Cla-Chr5:35646053 Cla06g01235 Cla-Chr6:25603481 2.12E-108 dispersed
Cla06g01235 Cla-Chr6:25603481 Cla08g01366 Cla-Chr8:26550907 1.38E-107 dispersed
Cla05g01681 Cla-Chr5:28466870 Cla06g01235 Cla-Chr6:25603481 1.72E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01235 K03263 - csv:101210204 325.865