Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01236 ATGGCGGAGCGGGAAAGCTTCGAAACTGACCAACTCGGAAGCTCCAAGGCGGCTACTGCCGGGCAAGAGGATGATGAAGAAGACATGGAAGATTCCGAGGATGAATCAGAGGTGGAATTGGAAGATGGAGGAGGAGGAGGAGGGAGTGAGTTGCAACCGACTGAGTTGAGAACCGGTTCGTGGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCGAATCAATCCTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCGCAATGAGCAAAAGGCTGTTGAAGCAACCCAGATAGATAAAGTTCAAGAACAAAACCAGCTTCAGGTGTCAACATTTAAGGGACCTGGTTCGGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAACTGCATCATCTGTTCCGAATGTAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATCGAATGTTGTGATCACTCGGGCCATAGAACAGGGACTGTTTACAAGAGCGAACATAGCCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCAAAAGAACCTGTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAGCACTCAAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGATGGACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGATGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCGGTCCGTAAACATATCGAATCAGCAGTAGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCAAAGAAACGACATGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCCATGAGCAATACGCAACCGAAGAAAACCGACGTGGTTGAGAGCCAAATCTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1542 46.56 MAERESFETDQLGSSKAATAGQEDDEEDMEDSEDESEVELEDGGGGGGSELQPTELRTGSWVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQAPSSRNEQKAVEATQIDKVQEQNQLQVSTFKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHRTGTVYKSEHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTPSKEPVRETAIVLERKRQHSSDSDGNDEFKIKDENGDGPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25608810 25612549 + ClCG06G012400.1 Cla06g01236 275428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01236 513 MobiDBLite consensus disorder prediction 23 41 - -
Cla06g01236 513 MobiDBLite consensus disorder prediction 310 361 - -
Cla06g01236 513 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 SMART WRKY_cls 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 MobiDBLite consensus disorder prediction 1 222 - -
Cla06g01236 513 Gene3D WRKY domain 359 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 Gene3D WRKY domain 185 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 ProSiteProfiles WRKY domain profile. 202 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 511 IPR044810 GO:0003700
Cla06g01236 513 MobiDBLite consensus disorder prediction 183 200 - -
Cla06g01236 513 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 1 511 - -
Cla06g01236 513 MobiDBLite consensus disorder prediction 53 166 - -
Cla06g01236 513 SUPERFAMILY WRKY DNA-binding domain 199 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 Pfam WRKY DNA -binding domain 376 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 Pfam WRKY DNA -binding domain 203 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 SUPERFAMILY WRKY DNA-binding domain 370 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01236 513 MobiDBLite consensus disorder prediction 310 342 - -
Cla06g01236 513 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01236 Cla-Chr6:25608810 Cla02g00274 Cla-Chr2:2700132 1.05E-46 dispersed
Cla06g01236 Cla-Chr6:25608810 Cla05g02414 Cla-Chr5:35653311 3.99E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61294 PF03106 WRKY 6.60E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01236 - - bhj:120071353 842.032