Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01263 | ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTTAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCAACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG | 1062 | 48.68 | MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELNLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25861007 | 25866029 | + | ClCG06G012690.1 | Cla06g01263 | 275455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01263 | 353 | SUPERFAMILY | DNA-binding domain | 41 | 106 | IPR016177 | GO:0003677 | |
Cla06g01263 | 353 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 3 | 332 | - | - | |
Cla06g01263 | 353 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 3 | 332 | - | - | |
Cla06g01263 | 353 | MobiDBLite | consensus disorder prediction | 240 | 265 | - | - | |
Cla06g01263 | 353 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | PRINTS | Ethylene responsive element binding protein signature | 181 | 201 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | SUPERFAMILY | DNA-binding domain | 140 | 201 | IPR016177 | GO:0003677 | |
Cla06g01263 | 353 | SMART | rav1_2 | 141 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | SMART | rav1_2 | 42 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | Pfam | AP2 domain | 140 | 191 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | Pfam | AP2 domain | 42 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | Gene3D | AP2/ERF domain | 140 | 201 | IPR036955 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | Gene3D | AP2/ERF domain | 42 | 107 | IPR036955 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 199 | IPR001471 | GO:0003700|GO:0006355 | |
Cla06g01263 | 353 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cla06g01263 | 353 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cla06g01263 | 353 | CDD | AP2 | 140 | 201 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g01263 | Cla-Chr6:25861007 | Cla10g01418 | Cla-Chr10:29236469 | 1.83E-98 | dispersed | |
Cla09g00312 | Cla-Chr9:3021600 | Cla06g01263 | Cla-Chr6:25861007 | 5.57E-85 | dispersed | |
Cla06g01263 | Cla-Chr6:25861007 | Cla08g01641 | Cla-Chr8:29034235 | 9.61E-82 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61295 | PF00847 | AP2 | 3.40E-09 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01263 | K09285 | - | csv:101219103 | 659.062 |