Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01263 ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTTAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCAACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG 1062 48.68 MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELNLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25861007 25866029 + ClCG06G012690.1 Cla06g01263 275455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01263 353 SUPERFAMILY DNA-binding domain 41 106 IPR016177 GO:0003677
Cla06g01263 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 332 - -
Cla06g01263 353 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 3 332 - -
Cla06g01263 353 MobiDBLite consensus disorder prediction 240 265 - -
Cla06g01263 353 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Cla06g01263 353 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 SMART rav1_2 42 111 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 Pfam AP2 domain 42 97 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Cla06g01263 353 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700|GO:0006355
Cla06g01263 353 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Cla06g01263 353 MobiDBLite consensus disorder prediction 1 41 - -
Cla06g01263 353 MobiDBLite consensus disorder prediction 1 21 - -
Cla06g01263 353 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01263 Cla-Chr6:25861007 Cla10g01418 Cla-Chr10:29236469 1.83E-98 dispersed
Cla09g00312 Cla-Chr9:3021600 Cla06g01263 Cla-Chr6:25861007 5.57E-85 dispersed
Cla06g01263 Cla-Chr6:25861007 Cla08g01641 Cla-Chr8:29034235 9.61E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61295 PF00847 AP2 3.40E-09 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01263 K09285 - csv:101219103 659.062