Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01285 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGCAACGAAGCAGTGCAACTTGAGAAGTCGTCGTCAAGATACTATATTCCGTCGTCGACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAAATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCCTTGTTGACCCGCTATATCTTTACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAGTATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGTGATACATTTAACCATAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGAACGCTCATCATAGGTTCTGTACTGATTACATGGCTGGCAGACCAGTACAACCTGATTTCATATGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACCGTGAGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTGCAATATAAGTGGGTAGCAACAAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCCCAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCAGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAAAGAATCATTTACTTTATCAGAAAAAGTGACTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2247 42.15 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSKFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALLVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRNTWANSTLVFEKCGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLRTLIIGSVLITWLADQYNLISYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEKVTDETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSIEPDR 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26208231 26215358 + ClCG06G012930.1 Cla06g01285 275477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01285 748 CDD CAP_ED 512 643 IPR000595 -
Cla06g01285 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 55 745 - -
Cla06g01285 748 SMART cnmp_10 512 643 IPR000595 -
Cla06g01285 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 745 - -
Cla06g01285 748 Pfam Ion transport protein 96 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla06g01285 748 Gene3D - 122 437 - -
Cla06g01285 748 ProSiteProfiles cAMP/cGMP binding motif profile. 512 596 IPR000595 -
Cla06g01285 748 SUPERFAMILY Voltage-gated potassium channels 88 434 - -
Cla06g01285 748 Pfam Cyclic nucleotide-binding domain 535 622 IPR000595 -
Cla06g01285 748 SUPERFAMILY cAMP-binding domain-like 442 634 IPR018490 -
Cla06g01285 748 Gene3D Helix hairpin bin 440 503 - -
Cla06g01285 748 Gene3D Jelly Rolls 510 630 IPR014710 -
Cla06g01285 748 MobiDBLite consensus disorder prediction 722 748 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02070 Cla-Chr2:35777075 Cla06g01285 Cla-Chr6:26208231 0 dispersed
Cla04g00887 Cla-Chr4:23866399 Cla06g01285 Cla-Chr6:26208231 0 dispersed
Cla04g01234 Cla-Chr4:27437952 Cla06g01285 Cla-Chr6:26208231 4.23E-123 dispersed
Cla05g02646 Cla-Chr5:37669363 Cla06g01285 Cla-Chr6:26208231 0 dispersed
Cla06g01285 Cla-Chr6:26208231 Cla06g01653 Cla-Chr6:30046179 0 dispersed
Cla11g00434 Cla-Chr11:5006657 Cla06g01285 Cla-Chr6:26208231 1.86E-128 dispersed
Cla06g01285 Cla-Chr6:26208231 Cla10g01367 Cla-Chr10:28734213 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01285 K05391 - csv:101218643 1383.62