Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01298 ATGGGATCTTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCTACCAACGGTTTCCATGACGATAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCAGCTGGCTAGCAAAGAATTTCATGGTGGAGGAAGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA 1191 42.82 MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHQLASKEFHGGGRDDQESFDYGVFSAIEEQRIIREYPYNNNKQPPNFWRMNA 396
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 26329847 26332942 + ClCG06G013070.2 Cla06g01298 275490
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01298 396 Gene3D Phosphorylase Kinase; domain 1 11 114 - -
Cla06g01298 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cla06g01298 396 SMART serkin_6 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01298 396 SUPERFAMILY Protein kinase-like (PK-like) 21 330 IPR011009 -
Cla06g01298 396 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Cla06g01298 396 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01298 396 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 380 - -
Cla06g01298 396 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01298 396 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Cla06g01298 396 CDD STKc_IRAK 45 313 - -
Cla06g01298 396 PANTHER OS01G0750732 PROTEIN 1 380 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla06g01298 Cla11g01200 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01298 Cla-Chr6:26329847 Cla07g01184 Cla-Chr7:28822190 3.25E-143 dispersed
Cla06g01298 Cla-Chr6:26329847 Cla11g00221 Cla-Chr11:2548037 2.84E-88 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80648 PF00069 Pkinase 7.10E-45 CL0016 Cla PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01298 - - csv:101207264 712.22