Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01299 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTCATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTATTCAGACGAAGCCACTCTCTACACCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTATGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTCATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTATTCAGACGAAGCCACTCTCTACACCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTATGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 2229 51.05 MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPIQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSMFLTDVQYGVVPTVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPIQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSMFLTDVQYGVVPTF 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26345424 26349262 - ClCG06G013080.1 Cla06g01299 275491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01299 742 CDD Bbox1_BBX-like 22 65 - -
Cla06g01299 742 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 374 - -
Cla06g01299 742 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cla06g01299 742 ProSiteProfiles CCT domain profile. 669 711 IPR010402 GO:0005515
Cla06g01299 742 CDD Bbox1_BBX-like 389 432 - -
Cla06g01299 742 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 377 742 - -
Cla06g01299 742 ProSiteProfiles Zinc finger B-box type profile. 390 432 IPR000315 GO:0008270
Cla06g01299 742 Pfam B-box zinc finger 430 475 IPR000315 GO:0008270
Cla06g01299 742 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cla06g01299 742 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 377 742 IPR045281 GO:0009909
Cla06g01299 742 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 374 IPR045281 GO:0009909
Cla06g01299 742 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Cla06g01299 742 CDD Bbox1_BBX-like 433 475 - -
Cla06g01299 742 ProSiteProfiles Zinc finger B-box type profile. 428 475 IPR000315 GO:0008270
Cla06g01299 742 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cla06g01299 742 Pfam CCT motif 302 344 IPR010402 GO:0005515
Cla06g01299 742 Pfam CCT motif 669 711 IPR010402 GO:0005515
Cla06g01299 742 CDD Bbox1_BBX-like 66 108 - -
Cla06g01299 742 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cla06g01299 742 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cla06g01299 742 SMART bboxneu5 433 475 IPR000315 GO:0008270
Cla06g01299 742 SMART bboxneu5 385 432 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01299 Cla11g01201 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01299 Cla-Chr6:26345424 Cla07g00964 Cla-Chr7:25824123 1.41E-09 dispersed
Cla09g02201 Cla-Chr9:39616913 Cla06g01299 Cla-Chr6:26345424 3.08E-09 dispersed
Cla11g01147 Cla-Chr11:23917262 Cla06g01299 Cla-Chr6:26345424 1.61E-10 dispersed
Cla02g00307 Cla-Chr2:2983214 Cla06g01299 Cla-Chr6:26345424 1.21E-09 transposed
Cla02g00819 Cla-Chr2:10875191 Cla06g01299 Cla-Chr6:26345424 3.52E-07 transposed
Cla05g02266 Cla-Chr5:34327843 Cla06g01299 Cla-Chr6:26345424 5.39E-06 transposed
Cla07g01450 Cla-Chr7:31758267 Cla06g01299 Cla-Chr6:26345424 1.31E-09 transposed
Cla07g01540 Cla-Chr7:32620563 Cla06g01299 Cla-Chr6:26345424 1.72E-48 transposed
Cla08g01382 Cla-Chr8:26678492 Cla06g01299 Cla-Chr6:26345424 3.36E-107 transposed
Cla11g01201 Cla-Chr11:25191166 Cla06g01299 Cla-Chr6:26345424 3.13E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61297 PF00643 zf-B_box 1.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01299 - - csv:101214816 711.449