Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01310 ATGCAGCAGAGGCAAACGAGGTATATGGAGAGGACGAACTCTATGAGGGAAAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGAGAAAACGACCAGCTCTAGCTAGTGTGATAGTAGAAGCTCTGAAGGTGGATAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCCAAGATAGGTCCTGCTAGAATTTCTGGAAGGAATGCTTGGGAAGTATGCGTTTATTCTAGTCTTGAAGTCCTGTCTTCTCCTAAAAGGATTGAAGGTCCCGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTAGAAGGTGAACAGGGTGCAGCAATCCATGTTGTTCTGGTTGATGCCAACACAGGCCATGTAGTAACATCTGGACAGGAAGCCTTGTCTAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAATTCAGACTTGGGTTAAAGGTGGCTTCTGGGTTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAGCATTACCCACCTGCATTAAATGATGAGGTGTGGAGATTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAGCGGCTTAACAAAAATGGAATATTCTCTGTTGAAGACTTTCTCCGAATGGTCGTTCGTGATTCTCAAAAGTTGCGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCCTAGAACATGCTAAGACCTGTGTCCTGAGCGGGAAGCTGTATATTTATTATCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCTGATAGCCAGAAGGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGCAAGTCACTTTTGAGCTCTAAGCAGCCTAAGAAGTCCAATGCATCCCGAAACGACTTTCAAGGTGGTCATCTTGATATTTCTAGTACTCTAGATCACGGACCACTGCCCCGCATGCCAGTGTCAGTTCAGCATCAGCAGCCTGTAGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACTTCTCGACCACAGTTTGACAACTCTCCATTTACTTCTAATGACTTGATCGGCAATTCTAACCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCGCTCGGTTCCTCTATTCAGGAATCTAATCTGAATCCATTTGACTGGTCAAACAATAGGGACAAGGGAGTTGACGACTTCTTTTCGGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATGGGAGGGCATGCATCTGTTAACGTCCATGATGAGGGCTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGTTCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGAAAGAAAGCAGCTGAGAGACGTGCGCAGATTGTTGAGTTGGACGAGGAATAG 1959 43.34 MQQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARISGRNAWEVCVYSSLEVLSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGQEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKNGIFSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSNASRNDFQGGHLDISSTLDHGPLPRMPVSVQHQQPVVDSGLSVAGYNDNTATRYSTQPQFVNSTSRPQFDNSPFTSNDLIGNSNQVHITRNDNSAFGLALGPPQASSSGFQALGSSIQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHASVNVHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26500235 26507546 + ClCG06G013190.1 Cla06g01310 275502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01310 652 PANTHER OS02G0177800 PROTEIN 8 650 IPR012416 GO:0005516
Cla06g01310 652 Pfam Calmodulin binding protein central domain 270 336 IPR046830 -
Cla06g01310 652 MobiDBLite consensus disorder prediction 408 429 - -
Cla06g01310 652 MobiDBLite consensus disorder prediction 408 435 - -
Cla06g01310 652 Pfam Calmodulin binding protein-like N-terminal domain 111 258 IPR046831 -
Cla06g01310 652 Pfam Calmodulin binding protein C-terminal domain 341 403 IPR046829 -
Cla06g01310 652 MobiDBLite consensus disorder prediction 10 29 - -
Cla06g01310 652 PANTHER CALMODULIN-BINDING PROTEIN 60 B 8 650 - -
Cla06g01310 652 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01080 Cla-Chr4:25964672 Cla06g01310 Cla-Chr6:26500235 2.45E-92 dispersed
Cla06g01310 Cla-Chr6:26500235 Cla06g01640 Cla-Chr6:29911293 8.40E-110 dispersed
Cla06g01310 Cla-Chr6:26500235 Cla02g01494 Cla-Chr2:29458562 8.47E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01310 - - cmo:103494282 1204.89