Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01317 ATGGCAACCCTCCAAATTCGTGGCATCGAAACCGAAATCTCTGTGGAGTTTCTGGTAGATCGAATCATCGACCTTCACAAAAGCATCTCGGAGCTTGAAACCCTAAAGCCATGCAAGAAAGTGAACCTCCTCTTCACCAACCTAGTGAACTTGTGCATTTTGCCTTGCTCAATGGATGTCTCAACATTGCCACCAAATGTACAAGCCATTCGTGAGAGCCTCATAGTTCTATGTGGCCAAGCTGAAAGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCACAACTACGTCAAATTAGCCAACCTTGAAAACAAGATTTTGAAAGACAATGGAGTTGTCAATCCAAAGAAGGTAGCTTTTGTTGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGAAACACATGAAGGGCACGTATTTCGATAACTATGATATAGACAGCGTGGCGAATGATGTGGCGGGAAAGATCGTGGGATCGGACGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTGGCGGCTCTTGTGGGGATGAAGAAGGAAGATAAAGTGAAGATTATAAAGCATTTAAGAAAGTATATGAAAGAAGGTGGGATTGTGGTAGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAAGTTGGAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCCACTGATGATGTTGTTAATTCGGTTATCTTAGTTCGCAAGCCTGTGATTATATGA 858 41.96 MATLQIRGIETEISVEFLVDRIIDLHKSISELETLKPCKKVNLLFTNLVNLCILPCSMDVSTLPPNVQAIRESLIVLCGQAESLLELEFSTLLSKIPKPLNNLTLFPYYHNYVKLANLENKILKDNGVVNPKKVAFVGSGPLPLTSIIMAMKHMKGTYFDNYDIDSVANDVAGKIVGSDAELEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEDKVKIIKHLRKYMKEGGIVVVRSAKGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILVRKPVII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26548171 26549028 - ClCG06G013210.1 Cla06g01317 275509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01317 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Cla06g01317 285 PANTHER NICOTIANAMINE SYNTHASE 1 283 - -
Cla06g01317 285 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Cla06g01317 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410|GO:0030418
Cla06g01317 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 277 IPR029063 -
Cla06g01317 285 PANTHER NICOTIANAMINE SYNTHASE 3 1 283 IPR004298 GO:0030410|GO:0030418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01317 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101209464 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01476 Cla-Chr2:29289348 Cla06g01317 Cla-Chr6:26548171 4.36E-89 dispersed
Cla06g01317 Cla-Chr6:26548171 Cla03g01694 Cla-Chr3:32853900 1.28E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1022 . . . . . . Bma07g00704 . Cmo10g00434 . . . . . Sed11g0754 . Cpe18g00614 Bhi02g00770 Tan09g1670 Cmetu02g0920 . Hepe09g0493 . . . . . . . . . . . . . Lsi06g01131 . . Cme02g01552 Blo08g00479 Blo14g00652 Bda02g00283 . Bpe08g00689 . . . . . . Cma10g00403 . Car10g00382 . . . . . . . . . . Cla06g01317 Cam06g1467 Cec06g1523 Cco06g1519 Clacu06g1426 Cmu06g1388 Cre06g2196 . Csa01g02140 Chy02g02214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g01476 CCT 1 275 Nicotianamine Synthase Gene Family AT1G09240 60.9 5.9e-94 341.3
Cla03g01694 CCT 1 273 Nicotianamine Synthase Gene Family AT1G09240 59.3 6.5e-93 337.8
Cla06g01317 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 54.0 6.8e-74 274.6
Cla03g01694 CCT 3 273 Nicotianamine Synthase Gene Family AT1G56430 61.5 1.1e-98 357.1
Cla02g01476 CCT 4 326 Nicotianamine Synthase Gene Family AT1G56430 55.8 1.5e-97 353.2
Cla06g01317 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 53.0 1.9e-76 283.1
Cla02g01476 CCT 1 275 Nicotianamine Synthase Gene Family AT5G04950 58.5 8.8e-90 327.4
Cla03g01694 CCT 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.4 5.7e-89 324.7
Cla06g01317 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 50.4 3.5e-70 262.3
Cla02g01476 CCT 1 275 Nicotianamine Synthase Gene Family AT5G56080 59.4 1.2e-91 333.6
Cla03g01694 CCT 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.4 4.4e-89 325.1
Cla06g01317 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.7 1.6e-70 263.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01317 Cla_Chr06 FPKM 10.961071 19.462685 5.973284 6.256832 11.821824 5.767402 9.716706 6.030485 4.040596 7.031416