Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01321 ATGGCGGCCGACGACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCGCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCGACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGACCGCCGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACCCCGGCGAACCCATTCTTCACGCCGGCGGAAATTGCAAAACAAGCGATGTCATCCGGCGCCAAACTTATCATAACCCAAGCAGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGAGGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTATTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGCCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTAAAACCTCCGATTTTGGCATTAATTTCAAGCCTTCAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGTTTTACTCGCAGCTAGTATTCCTAATTAA 1695 48.79 MAADDDSSPEFIFRSKLPDIAIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVTAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPAEIAKQAMSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDEVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLPHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVKPPILALISSLQVVFYKRINRVFFVDSIPKSQSGKILRRQLRVLLAASIPN 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26576714 26580911 - ClCG06G013250.1 Cla06g01321 275513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01321 564 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 556 - -
Cla06g01321 564 CDD 4CL 22 554 - -
Cla06g01321 564 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Cla06g01321 564 Gene3D - 446 560 IPR045851 -
Cla06g01321 564 SUPERFAMILY Acetyl-CoA synthetase-like 11 560 - -
Cla06g01321 564 Pfam AMP-binding enzyme 37 451 IPR000873 -
Cla06g01321 564 Pfam AMP-binding enzyme C-terminal domain 460 548 IPR025110 -
Cla06g01321 564 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 556 - -
Cla06g01321 564 Gene3D - 3 445 IPR042099 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01321 Cla11g01229 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00741 Cla-Chr2:9012530 Cla06g01321 Cla-Chr6:26576714 0 dispersed
Cla06g01321 Cla-Chr6:26576714 Cla09g00323 Cla-Chr9:3124225 1.10E-08 dispersed
Cla02g02292 Cla-Chr2:38030269 Cla06g01321 Cla-Chr6:26576714 1.79E-17 transposed
Cla11g01229 Cla-Chr11:25623628 Cla06g01321 Cla-Chr6:26576714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01321 K01904 - csv:101218077 873.233