Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01334 ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACTAACTTTGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGAGTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCATTGTCAACCGCAACTTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATATTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATATTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATAACCGACTTAGCATCTAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1452 48.62 MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSESAASDGGSRSAEERDVHHSPPLSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDIPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26737601 26741848 + ClCG06G013400.2 Cla06g01334 275526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01334 483 ProSiteProfiles AP2/ERF domain profile. 136 202 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 MobiDBLite consensus disorder prediction 47 70 - -
Cla06g01334 483 MobiDBLite consensus disorder prediction 347 369 - -
Cla06g01334 483 SUPERFAMILY DNA-binding domain 135 204 IPR016177 GO:0003677
Cla06g01334 483 SMART rav1_2 238 302 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 SMART rav1_2 136 208 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 CDD AP2 135 204 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 ProSiteProfiles AP2/ERF domain profile. 238 296 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 MobiDBLite consensus disorder prediction 85 129 - -
Cla06g01334 483 CDD AP2 237 298 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 SUPERFAMILY DNA-binding domain 237 298 IPR016177 GO:0003677
Cla06g01334 483 MobiDBLite consensus disorder prediction 101 126 - -
Cla06g01334 483 MobiDBLite consensus disorder prediction 311 369 - -
Cla06g01334 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 120 350 - -
Cla06g01334 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 120 350 - -
Cla06g01334 483 MobiDBLite consensus disorder prediction 311 331 - -
Cla06g01334 483 Pfam AP2 domain 238 288 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 Pfam AP2 domain 136 194 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 Gene3D AP2/ERF domain 238 298 IPR036955 GO:0003700|GO:0006355
Cla06g01334 483 Gene3D AP2/ERF domain 136 204 IPR036955 GO:0003700|GO:0006355
Cla06g01334 483 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700|GO:0006355
Cla06g01334 483 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01334 Cla-Chr6:26737601 Cla11g00873 Cla-Chr11:14128578 2.71E-12 dispersed
Cla06g01334 Cla-Chr6:26737601 Cla08g01641 Cla-Chr8:29034235 5.22E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61301 PF00847 AP2 3.50E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01334 K09285 - csv:101210453 686.026