Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01336 ATGGCTTCCGATTCTTCATCTGAGGGAGCTGCTCTCGATCCATTAAGATACAGTATGATGAGTATGGAGGAGAAAAGGAATTTGGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGACAAGAGATTTTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGGAAATATACTGGACTAACAAAACTAAAAATAATTGAGAACCTTCTGAAAATTGTCGGTGAAAAGAAATCAGGGTCAACTGAGGATGTAGCGGACCTCGACAGTCAGTCTTCTCCTTGTCTTTCTCCAAAGATTACCAAAAGGCAAAGAAAAATTGATCAGCCAGCACGGCTACCTGTTCCTGTAAACCATATTCCAATTAGTAACACTAAGATGGATTCAAATATTGCAGTTTACTGCAGAAATTCGGCATGCAAAGCAACCTTAAATCAAGATGTTAAATTTTGTAAGAGGTGTTCATGCTGCATCTGTTATCAGTATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCTGCTCTGACCCCCCATTTCAAGATACTTCATGCGGTATGTCGTGCCATCTTGAATGTGCGTTGAAGCATGAAAAATGTGGGATTTCTAGAGGAAAGCAGACGGGAATTGAAGGGACTTTTTGTTGTGCATCTTGTGGAAAAGTCAACGACTTGCATGGGTGTTTGAGAAAACAATTGATGAAGGCAAAGGAAACAAGGAGGGTGGATATACTGTGTTACCGCATCTCTTTAAGCAAAAAGCTTTTGAGTGAAGGTGAAAAGTATCAAGATGTTCATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAGGTGGGTCCTTTGACTGGTGTACCAGTTGGTACAGGCAGAGGAATAGTGAACAGGCTTTCTTCAGGACCGGAGGTTCAGAAACTCTGCTCGTTAGCCATTGATACACTCGATTCCTTGCTCTCCACGAATATCTTACATCAGTTGCCCAGTTCCATCATACAAGATACTGATTTGGTAGCTACAAACTTCTTAAGGTTTGAAGATGTTGATGCAACATACGTTATGGTGGTTGTGGGTACTGAAGATGTTTCTTCCGGAGAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGCGAAATAGATTACCCTATAGAGCCAACTTGCACCTTGTCTCAATCCAATTTGAGGTTTGTTGTCCGAGGACTAACCCCATCTTCAGAATACTATTTCAAAGCCATTTCCTTTGATGGGACAGGAGATTTGGGGACATGTGAAGTTCAAGTCTCAACTGCTATTCCACGGGAGGATGACACAAGTTTCTTGGCGATTGAAAGAAGTCAGAGTCCTATTACCAACTTCAGTGAGCTCTCTAATCCTTCTTCCGTAGAAGATGAAACCAACAATGTAATGCCTTGTAGTGACCAAACTGATAGTCGGACAGAGAGCTATCTTTCTTATTGCAAGGATTCTAACAAGATCGTCATTACTAACCTGTCTGAGGATAGAATAACCTGCACCGATGTCGGTGGAGGGGGAACAGCAAAAGATTCTGTTTCGTTGTTGGATGAGGAACACATTACAAGAAAAAGTAGCATGCTGCCTGATCCGAATGTTTCAAAACTTGAAGACAGGCATTCTTCTGAGGTGCATATCATTGAAGGTACAAGCATGAATAAGGGCTCGAATTCTGCCATTCAAGAAGGGACTAAATGCATACCATTTGTTAGCAGCTCCGAGGCTGGATTGCCGGTTACTCCTTGCAAAATGGAAATACTCAAGGATGTTCTTGGAAGGAGTAGCCGATCAAAGTCCAATGCCAAGGATCGAGATAATAATGGGTCTGGAGGAGAGGAACTCCGACATGGCAGCACGTCTAAGAAAAGAAATGCGGAGAGGCAAGATGCGGATTGTACTGCAAACGGTATTTCTGATAAGGATTTTGAGTATTATGTAAAGTTGATTAGATGGCTAGAACGCGAAGGACACATAGAGAAGAACTTCAGACAAAAATTCTTAACTTGGTATAGCTTGAGAGCCACAACACAAGAAGTTAGGATAGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCGGAACAACTTGTGGATACCTTTTCGGAATGCATTTCAAGCAAGAAAACATGTGCTGCAAGCTGGATTCATGTTAGCCTCCTAGTAAAGAATTTGAGTTCTTGCAATTGCTTGGAGGCTGAACGACATTTTGACGATGAACAAAGCTTCAAAGATCGATCCTTCCAATAA 2292 41.88 MASDSSSEGAALDPLRYSMMSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIIENLLKIVGEKKSGSTEDVADLDSQSSPCLSPKITKRQRKIDQPARLPVPVNHIPISNTKMDSNIAVYCRNSACKATLNQDVKFCKRCSCCICYQYDDNKDPSLWLSCCSDPPFQDTSCGMSCHLECALKHEKCGISRGKQTGIEGTFCCASCGKVNDLHGCLRKQLMKAKETRRVDILCYRISLSKKLLSEGEKYQDVHQIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCSLAIDTLDSLLSTNILHQLPSSIIQDTDLVATNFLRFEDVDATYVMVVVGTEDVSSGETVGYRLWHRKACEIDYPIEPTCTLSQSNLRFVVRGLTPSSEYYFKAISFDGTGDLGTCEVQVSTAIPREDDTSFLAIERSQSPITNFSELSNPSSVEDETNNVMPCSDQTDSRTESYLSYCKDSNKIVITNLSEDRITCTDVGGGGTAKDSVSLLDEEHITRKSSMLPDPNVSKLEDRHSSEVHIIEGTSMNKGSNSAIQEGTKCIPFVSSSEAGLPVTPCKMEILKDVLGRSSRSKSNAKDRDNNGSGGEELRHGSTSKKRNAERQDADCTANGISDKDFEYYVKLIRWLEREGHIEKNFRQKFLTWYSLRATTQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAASWIHVSLLVKNLSSCNCLEAERHFDDEQSFKDRSFQ 763
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 26765168 26770720 - ClCG06G013420.1 Cla06g01336 275528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01336 763 MobiDBLite consensus disorder prediction 604 643 - -
Cla06g01336 763 CDD PHD_VIN3_plant 161 225 - -
Cla06g01336 763 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 728 IPR044514 GO:0010048|GO:0040029
Cla06g01336 763 SUPERFAMILY Fibronectin type III 350 425 IPR036116 GO:0005515
Cla06g01336 763 Pfam PHD - plant homeodomain finger protein 141 259 IPR032881 -
Cla06g01336 763 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 728 - -
Cla06g01336 763 MobiDBLite consensus disorder prediction 458 482 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla06g01336 Cla11g01180 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01023 Cla-Chr6:21975440 Cla06g01336 Cla-Chr6:26765168 7.32E-107 dispersed
Cla06g01336 Cla-Chr6:26765168 Cla08g01157 Cla-Chr8:24418038 6.66E-18 dispersed
Cla11g01180 Cla-Chr11:24709214 Cla06g01336 Cla-Chr6:26765168 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01336 - - csv:101220456 1293.49