Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01342 ATGGCGGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCACAACTCAAGAAGGAGAAGACAGACTTCAATTATTTGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTAAAGTTTTTGGGGTTCATGTGGAATCCCTTATCATGGGTCATGGAAGCTGCAGCCATTATGGCAATTGCTTTGGCTAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTAGGAATTATATGTTTATTGGTGATTAACTCCACAATCAGTTTCATTGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAGACTAAGGTGCTGAGGGATGGCAAATGGAGTGAGCAGGATGCAGCAATTTTGGTTCCAGGAGATATAATTAGTGTAAAGTTGGGAGATATTATCCCGGCGGATGCTCGGCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAAAATCCAGGGGATGAAATCTTCTCTGGTTCAACTTGCAAACAAGGGGAAATTGAAGCTGTTGTAATTGCTACGGGTGTCCATACTTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACTCACCAAGTTGGTCACTTCCAAAAAGTGCTTACATCCATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGTTTATTGAGATTATTGTAATGTACCCAATTCAACGTCGTAAATACCGTGACGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCAATTGCTATGCCTACTGTCCTGTCTGTCACAATGGCTATTGGATCTCATAAGCTATCCCAACAGGGTGCCATCACGAAGCGTATGACTGCCATTGAAGAATTGGCGGGTATGGATGTCCTTTGCAGTGATAAAACAGGGACATTGACTCTAAACAAGCTTAGTGTTGATGTAAATTTGGTTGAGGTTTTTGCTAAGGGTGTGGATAAACAACATGTCATTTTGCTGGCTGCAAGAGCTTCTCGAATCGAAAATCAAGATGCAATTGATACTGCTATTGTAGGAATGCTAGCTGATCCTAAAGAGGCACGAGCAGACATCAGAGAAGTGCATTTCTTCCCATTCAATCCAGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCCGAGCAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAGGAAGAGGGCTCATTCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGTTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTGTTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTTAATCTAGGAGTGAACGTCAAGATGATTACTGGGGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCCGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTAGAAGAGTTAATTGAAAAGGCAGATGGCTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAGGAAGCTGCAGGAGAGGAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATTGCAGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACCATATATGCAGTTTCAATCACAATACGTATCGTGTTTGGCTTCTTGTTTATTGCCCTCATATGGAAATTTGACTTCTCCCCATTCATGGTTTTGATCATTGCCATTCTAAATGATGGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTATCATATTCTTCTGGGTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTGCAAGTGAGTATTGTCAGCCAGGCCTTGATATTTGTGACTCGATCGCGCAGTTGGTCCTACGTAGAACGACCGGGGTTGCTACTGATGGGTGCTTTCGTTATTGCACAACTGGTAGCAACACTCATAGCAGTATATGCCAATTGGGGATTTGCAAAGATAAAAGGGGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTATAGTATTATTTTCTACATTCCATTAGACTTGATCAAGTTTGCAATTCGCTATATCCTCAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAGAACTAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCGGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGCTTAGGGAGCTGAATACTCTGAAGGGTCATGTTGAATCAGTAGTGAAATTGAAAGGGCTGGATATTGATACAATCCAACAACATTACACAGTGTAA 2862 42.91 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLTTQEGEDRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMFIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDVNLVEVFAKGVDKQHVILLAARASRIENQDAIDTAIVGMLADPKEARADIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVRKRAHSVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTIIFFWVMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFVIAQLVATLIAVYANWGFAKIKGAGWGWAGVVWIYSIIFYIPLDLIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26836182 26844365 + ClCG06G013470.2 Cla06g01342 275534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01342 953 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cla06g01342 953 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cla06g01342 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 848 IPR023298 -
Cla06g01342 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cla06g01342 953 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 SFLD Haloacid Dehalogenase 312 640 - -
Cla06g01342 953 Gene3D - 342 489 IPR023299 GO:0000166
Cla06g01342 953 SFLD p-type atpase 312 640 IPR044492 -
Cla06g01342 953 Gene3D - 95 816 - -
Cla06g01342 953 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla06g01342 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 102 345 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01342 953 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cla06g01342 953 Gene3D - 133 217 - -
Cla06g01342 953 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla06g01342 953 Gene3D - 902 953 - -
Cla06g01342 953 Coils Coil 904 924 - -
Cla06g01342 953 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cla06g01342 953 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cla06g01342 953 PANTHER CALCIUM-TRANSPORTING ATPASE 4 933 - -
Cla06g01342 953 Gene3D - 327 626 IPR023214 -
Cla06g01342 953 PANTHER PLASMA MEMBRANE ATPASE 4 933 - -
Cla06g01342 953 Pfam E1-E2 ATPase 132 309 - -
Cla06g01342 953 SUPERFAMILY HAD-like 326 636 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01342 Cla-Chr6:26836182 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla11g01171 Cla-Chr11:24491447 Cla06g01342 Cla-Chr6:26836182 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01342 K01535 - csv:101221783 1762.66