Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01348 ATGGCGGCCGGAGAAGAGGAGATGGCGGCGGCGGCAGCGGCGTTGGGAGTGGCCGGAAAGAAGGGTGGTGGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTAGCTACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTACGCGGTGGCGAGTGGCATGTTGCTGCTGCTGTCGTTACTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCACACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAACTGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGACATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCATCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTTATGGGAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCGAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAAGTAAGCATCCGATCCCCTGCTTTGCATGTGCAACATCGGCATTTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACAGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTTGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCAATTGCTCCTAGGATTGCTATACTCGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCATCACCATCACCATCACCATGAGCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAGTTCAAGTTTATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGGGTGCAACACTGACAGCTCCGACTCTTCTAGTCATCATCACCACCACCACCATCATCATCATGAGCACGAAGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAGACTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAATCTGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAACAAACATCACTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGTTCTGCTGTCATTCTTGAGCTCCATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACGTGATCATGACATCCAAACTCCCAAGTGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCACTGCCACCAAGGAAGCTTCGACACTTCTGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAATCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGTTCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAATGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCCAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAATGAAATTATTATAGAATAG 3660 44.78 MAAGEEEMAAAAAALGVAGKKGGGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGNCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKSVIIISTCIVVIPIALRLPNHRHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVYGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKEVSIRSPALHVQHRHLGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSATHCSSKHKCCDVSSHSDEYSGHTHDRCDNHSSHSSRHRHHHHHHHHEHEDCTSLKKTHDGCLPQNHASKCVSRLKSSSLCKKSKLVDSSSKVDGSTGNVNLCEHDHGCNTDSSDSSSHHHHHHHHHHEHEDCGSLKKTHEGCLPQNCASKCDSGMKTSSSCKKSKLVESSSKVDDSAGSLNLCEHGHVHNDQPADHDHHAYSSCAHHVENKHHSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELHESGCCSHNDQSAQRDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKSISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGVHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCKSCKRGSSQLQIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26954434 26962331 + ClCG06G013530.1 Cla06g01348 275540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01348 1219 Gene3D - 393 668 IPR023214 -
Cla06g01348 1219 SFLD p-type atpase 385 669 IPR044492 -
Cla06g01348 1219 SUPERFAMILY HAD-like 402 718 IPR036412 -
Cla06g01348 1219 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 396 IPR023298 -
Cla06g01348 1219 MobiDBLite consensus disorder prediction 1001 1024 - -
Cla06g01348 1219 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Cla06g01348 1219 PRINTS P-type cation-transporting ATPase superfamily signature 617 636 - -
Cla06g01348 1219 PRINTS P-type cation-transporting ATPase superfamily signature 402 416 - -
Cla06g01348 1219 PRINTS P-type cation-transporting ATPase superfamily signature 549 559 - -
Cla06g01348 1219 PRINTS P-type cation-transporting ATPase superfamily signature 641 653 - -
Cla06g01348 1219 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 160 722 - -
Cla06g01348 1219 ProSiteProfiles Heavy-metal-associated domain profile. 27 93 IPR006121 GO:0046872
Cla06g01348 1219 ProSitePatterns Hypothetical cof family signature 2. 617 639 - -
Cla06g01348 1219 MobiDBLite consensus disorder prediction 758 786 - -
Cla06g01348 1219 MobiDBLite consensus disorder prediction 1001 1035 - -
Cla06g01348 1219 ProSitePatterns E1-E2 ATPases phosphorylation site. 404 410 IPR018303 -
Cla06g01348 1219 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 160 720 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cla06g01348 1219 Pfam haloacid dehalogenase-like hydrolase 398 631 - -
Cla06g01348 1219 Gene3D - 24 95 - -
Cla06g01348 1219 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 183 572 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01348 1219 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 592 695 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01348 1219 Gene3D - 198 312 - -
Cla06g01348 1219 SFLD C1.7: P-type atpase like 385 669 - -
Cla06g01348 1219 ProSitePatterns Anaphylatoxin domain signature. 1165 1199 IPR000020 GO:0005576
Cla06g01348 1219 SUPERFAMILY HMA, heavy metal-associated domain 23 97 IPR036163 GO:0046872
Cla06g01348 1219 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 24 744 - -
Cla06g01348 1219 SUPERFAMILY Calcium ATPase, transduction domain A 223 308 IPR008250 -
Cla06g01348 1219 CDD HMA 30 91 IPR006121 GO:0046872
Cla06g01348 1219 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 24 744 - -
Cla06g01348 1219 Pfam E1-E2 ATPase 219 380 - -
Cla06g01348 1219 Gene3D - 413 535 IPR023299 GO:0000166
Cla06g01348 1219 CDD P-type_ATPase_HM 110 719 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01348 Cla-Chr6:26954434 Cla10g01496 Cla-Chr10:30188099 3.41E-20 dispersed
Cla02g00794 Cla-Chr2:10286516 Cla06g01348 Cla-Chr6:26954434 3.99E-46 transposed
Cla11g01161 Cla-Chr11:24336026 Cla06g01348 Cla-Chr6:26954434 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01348 K01534 - csv:101211188 1682.54