Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01355 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCTGTCATCAACTAATATGAAAGGAGATGCAGAAAATGTTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAGCAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGATGATAAAGTTCTTTTAGAAGCTGAAACCTTTGTGTTGAAGGTGGAAAATGATCTGACCTTTTGTTGTTATGTGGGTTCTCCCCCCCACATAACTATTTACTACAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATGTAAATAGTGCAGTTAAAATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCGTTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGCGAGTGCAAGATGGACATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAAGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTTCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATTAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAAAAGATGTTCTCACCATATCAAGGTTTGTGTTCTGTATCCTCTGTAAGGTTCTGCACATCACTTCTGCTCTTGGCCTCATCCAATTTCCGTCTTTTGGAAGCTAA 2394 40.52 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSLSSTNMKGDAENVEPVVKKNQQRKRRKSKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEDDKVLLEAETFVLKVENDLTFCCYVGSPPHITIYYSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHVNSAVKIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMDILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTFNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKTFSKRKRDKKPAEKDVLTISRFVFCILCKVLHITSALGLIQFPSFGS 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27047390 27056091 + ClCG06G013600.2 Cla06g01355 275547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01355 797 Pfam PHD-finger 275 330 IPR019787 -
Cla06g01355 797 SMART PHD_3 275 328 IPR001965 -
Cla06g01355 797 MobiDBLite consensus disorder prediction 592 611 - -
Cla06g01355 797 SMART HOX_1 533 595 IPR001356 GO:0003677
Cla06g01355 797 ProSiteProfiles 'Homeobox' domain profile. 531 591 IPR001356 GO:0003677
Cla06g01355 797 ProSiteProfiles Zinc finger PHD-type profile. 273 330 IPR019787 -
Cla06g01355 797 SUPERFAMILY Homeodomain-like 534 597 IPR009057 -
Cla06g01355 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 324 IPR013083 -
Cla06g01355 797 PANTHER POLYCOMB PROTEIN PCL 1 724 - -
Cla06g01355 797 Gene3D - 533 604 - -
Cla06g01355 797 MobiDBLite consensus disorder prediction 110 148 - -
Cla06g01355 797 CDD PHD_PRHA_like 275 327 IPR045876 -
Cla06g01355 797 Pfam Homeodomain 543 586 IPR001356 GO:0003677
Cla06g01355 797 MobiDBLite consensus disorder prediction 386 408 - -
Cla06g01355 797 CDD homeodomain 539 592 IPR001356 GO:0003677
Cla06g01355 797 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 724 - -
Cla06g01355 797 SUPERFAMILY FYVE/PHD zinc finger 271 332 IPR011011 -
Cla06g01355 797 MobiDBLite consensus disorder prediction 366 421 - -
Cla06g01355 797 MobiDBLite consensus disorder prediction 478 498 - -
Cla06g01355 797 ProSitePatterns Zinc finger PHD-type signature. 276 327 IPR019786 -
Cla06g01355 797 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01109 Cla-Chr5:11493168 Cla06g01355 Cla-Chr6:27047390 2.57E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61302 PF00628 PHD 1.30E-09 CL0390 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01355 - - csv:101212164 1147.11