Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01360 ATGGATAGTATCGGAGAGGATTACTTTAATTCCTTTGGAGCTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTCGAAGAAGATAGCAGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.5 MDSIGEDYFNSFGADIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKSKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 27100692 27105134 - ClCG06G013660.1 Cla06g01360 275552
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01360 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 239 - -
Cla06g01360 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983
Cla06g01360 245 SMART finulus 54 103 IPR011598 GO:0046983
Cla06g01360 245 PANTHER TRANSCRIPTION FACTOR BHLH35 2 239 - -
Cla06g01360 245 Gene3D - 46 114 IPR036638 GO:0046983
Cla06g01360 245 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Cla06g01360 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02106 Cla-Chr2:36080981 Cla06g01360 Cla-Chr6:27100692 1.77E-19 dispersed
Cla05g02543 Cla-Chr5:36774438 Cla06g01360 Cla-Chr6:27100692 2.31E-22 dispersed
Cla06g01360 Cla-Chr6:27100692 Cla10g00083 Cla-Chr10:808041 7.69E-17 dispersed
Cla11g00989 Cla-Chr11:18870608 Cla06g01360 Cla-Chr6:27100692 6.99E-16 dispersed
Cla11g01141 Cla-Chr11:23611726 Cla06g01360 Cla-Chr6:27100692 4.38E-85 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61304 PF00010 HLH 1.60E-11 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01360 - - cmo:103494233 400.208