Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01360 | ATGGATAGTATCGGAGAGGATTACTTTAATTCCTTTGGAGCTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTCGAAGAAGATAGCAGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA | 738 | 43.5 | MDSIGEDYFNSFGADIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKSKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 27100692 | 27105134 | - | ClCG06G013660.1 | Cla06g01360 | 275552 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01360 | 245 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 2 | 239 | - | - | |
| Cla06g01360 | 245 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 49 | 112 | IPR036638 | GO:0046983 | |
| Cla06g01360 | 245 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983 | |
| Cla06g01360 | 245 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 2 | 239 | - | - | |
| Cla06g01360 | 245 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983 | |
| Cla06g01360 | 245 | Pfam | Helix-loop-helix DNA-binding domain | 55 | 97 | IPR011598 | GO:0046983 | |
| Cla06g01360 | 245 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g02106 | Cla-Chr2:36080981 | Cla06g01360 | Cla-Chr6:27100692 | 1.77E-19 | dispersed | |
| Cla05g02543 | Cla-Chr5:36774438 | Cla06g01360 | Cla-Chr6:27100692 | 2.31E-22 | dispersed | |
| Cla06g01360 | Cla-Chr6:27100692 | Cla10g00083 | Cla-Chr10:808041 | 7.69E-17 | dispersed | |
| Cla11g00989 | Cla-Chr11:18870608 | Cla06g01360 | Cla-Chr6:27100692 | 6.99E-16 | dispersed | |
| Cla11g01141 | Cla-Chr11:23611726 | Cla06g01360 | Cla-Chr6:27100692 | 4.38E-85 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61304 | PF00010 | HLH | 1.60E-11 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01360 | - | - | cmo:103494233 | 400.208 |