Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01369 | ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCCCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTATTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGTGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACAGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA | 837 | 50.42 | MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27212737 | 27214487 | - | ClCG06G013780.1 | Cla06g01369 | 275561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01369 | 278 | SUPERFAMILY | WRKY DNA-binding domain | 201 | 264 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla06g01369 | 278 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 8 | 270 | - | - | |
Cla06g01369 | 278 | ProSiteProfiles | WRKY domain profile. | 198 | 264 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla06g01369 | 278 | Pfam | Plant zinc cluster domain | 158 | 201 | IPR018872 | - | |
Cla06g01369 | 278 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 8 | 270 | IPR044810 | GO:0003700 | |
Cla06g01369 | 278 | MobiDBLite | consensus disorder prediction | 75 | 122 | - | - | |
Cla06g01369 | 278 | MobiDBLite | consensus disorder prediction | 255 | 278 | - | - | |
Cla06g01369 | 278 | Pfam | WRKY DNA -binding domain | 205 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla06g01369 | 278 | SMART | WRKY_cls | 203 | 263 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla06g01369 | 278 | Gene3D | WRKY domain | 190 | 265 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00141 | Cla-Chr5:1297484 | Cla06g01369 | Cla-Chr6:27212737 | 8.43E-31 | dispersed | |
Cla05g02650 | Cla-Chr5:37719643 | Cla06g01369 | Cla-Chr6:27212737 | 3.20E-27 | dispersed | |
Cla06g01369 | Cla-Chr6:27212737 | Cla07g00061 | Cla-Chr7:678123 | 1.15E-48 | dispersed | |
Cla06g01369 | Cla-Chr6:27212737 | Cla01g01663 | Cla-Chr1:31522879 | 4.50E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61305 | PF03106 | WRKY | 1.20E-25 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01369 | - | - | bhj:120070667 | 520.776 |