Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01369 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCCCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTATTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGTGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACAGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 50.42 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27212737 27214487 - ClCG06G013780.1 Cla06g01369 275561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01369 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01369 278 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 270 - -
Cla06g01369 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01369 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Cla06g01369 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 270 IPR044810 GO:0003700
Cla06g01369 278 MobiDBLite consensus disorder prediction 75 122 - -
Cla06g01369 278 MobiDBLite consensus disorder prediction 255 278 - -
Cla06g01369 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01369 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01369 278 Gene3D WRKY domain 190 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00141 Cla-Chr5:1297484 Cla06g01369 Cla-Chr6:27212737 8.43E-31 dispersed
Cla05g02650 Cla-Chr5:37719643 Cla06g01369 Cla-Chr6:27212737 3.20E-27 dispersed
Cla06g01369 Cla-Chr6:27212737 Cla07g00061 Cla-Chr7:678123 1.15E-48 dispersed
Cla06g01369 Cla-Chr6:27212737 Cla01g01663 Cla-Chr1:31522879 4.50E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61305 PF03106 WRKY 1.20E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01369 - - bhj:120070667 520.776