Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01380 ATGGCAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACGACGCCAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCATCAGTACACCAACAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCTAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 840 38.93 MADHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQQLSFTLIPKEELGINNNDDDDANNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHHQYTNNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27309972 27312019 + ClCG06G013890.1 Cla06g01380 275572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01380 279 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Cla06g01380 279 Gene3D - 137 207 - -
Cla06g01380 279 CDD homeodomain 146 203 IPR001356 GO:0003677
Cla06g01380 279 SMART HOX_1 144 206 IPR001356 GO:0003677
Cla06g01380 279 Pfam Homeobox associated leucine zipper 202 235 IPR003106 GO:0006355|GO:0043565
Cla06g01380 279 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 269 - -
Cla06g01380 279 Coils Coil 201 235 - -
Cla06g01380 279 SUPERFAMILY Homeodomain-like 134 203 IPR009057 -
Cla06g01380 279 PANTHER - 10 269 - -
Cla06g01380 279 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Cla06g01380 279 MobiDBLite consensus disorder prediction 108 145 - -
Cla06g01380 279 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Cla06g01380 279 MobiDBLite consensus disorder prediction 116 139 - -
Cla06g01380 279 Pfam Homeodomain 146 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01380 Cla-Chr6:27309972 Cla10g00795 Cla-Chr10:17043236 2.37E-56 dispersed
Cla06g01380 Cla-Chr6:27309972 Cla10g01677 Cla-Chr10:32506524 1.54E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61306 PF00046 Homeodomain 1.10E-15 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01380 K09338 - csv:101203427 379.407