Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01383 ATGTTTTGCAGGCCAACTCAGGGATGCCTCGCCGAATACTTCAAGGGATTCATTTTGCATTTTGAACCAACAAAATTTATATATGCTGCTGTTCCAGGAAACTCTGAAGATCAGATGAAGAGCTCTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTTCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAAAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTCTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTACAACTAGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGTATACATAAAAGACCACAACAATTGTCCAGCATGGAAACTATATGAGAGATCTGCACTCACCGAACTAGTGGATCCAAGGATGAAGGACGGTGGATATGTGGAGAAGAATGTAGCACACGCAATTCATGTTGCTTTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATCGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1332 40.62 MFCRPTQGCLAEYFKGFILHFEPTKFIYAAVPGNSEDQMKSSSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLKKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGTTSGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYVYIKDHNNCPAWKLYERSALTELVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27330270 27332317 + ClCG06G013920.1 Cla06g01383 275575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01383 443 Gene3D Phosphorylase Kinase; domain 1 89 195 - -
Cla06g01383 443 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 95 418 - -
Cla06g01383 443 ProSiteProfiles Protein kinase domain profile. 119 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01383 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Cla06g01383 443 Gene3D Transferase(Phosphotransferase) domain 1 196 412 - -
Cla06g01383 443 CDD STKc_IRAK 125 404 - -
Cla06g01383 443 SMART serkin_6 119 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01383 443 PANTHER RECEPTOR-LIKE KINASE 95 418 - -
Cla06g01383 443 SUPERFAMILY Protein kinase-like (PK-like) 104 426 IPR011009 -
Cla06g01383 443 Pfam Protein kinase domain 122 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01383 Cla-Chr6:27330270 Cla09g02204 Cla-Chr9:39646954 1.37E-98 dispersed
Cla06g01383 Cla-Chr6:27330270 Cla11g01693 Cla-Chr11:30524384 4.26E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80650 PF00069 Pkinase 2.70E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01383 - - csv:101203677 703.36