Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01384 | ATGATTGCAGATGCTATTACTCCGCCCGATAACTCCGACCGTATCCGGCATCAGCTTCGAGAGCATCTACTGGTGGTGAACGAGGAAATTGAAAACGGAGGAGTGGACGGTCCTGTCAAGATTCGTATACGTAATTTGACGAAGCTTTCAAACGGAATGGAGGATCCGATTCTCAGAGGAATCAGTGTGGATATACCCAAGGGGAAGATCGTCGGAATTATAGGCCCGAGTGGCGGTGGCAAATCCACGACGCTTAGGGCTCTTAATCGGCTGTGGGAGCCGCCGGCGGGAACCGTCTTTTTAGACGGCCACGATATTGTCAATCTCGACGTTCTTGGCCTTCGCCGGAAAGTCGGGATGCTCTTCCAACTTCCTGTTCTCTTTGAAGGTACTGTTGCTGATAATATAAGATATGGACCACAGTTAAGGGGAGAGAAGCTGAGTGATGATGAAGTTCACAAGTTACTCAATCTAGCAGATCTCGACTCGTCGTTCTTTAGCAAGATTGGTTCTGAACTATCCGTGGGGCAAGCTCAACGAGTCGCACTTGCTCGAACCTTAGCAAATGCACCTGAGGTGTTGTTGCTAGATGAACCAACGAGCGCACTGGATCCTATCTCGACCGAGAACATCGAGGACGTGTTAGTGAAGCTGAAGAAGAAATGGGGATTAACAATCGCGAGATTGTCGAAATTTTACCGCCGAACAAACTCTGCGAAGCCAAGCACCCCATGGCCCTCAAGTTTCTTGAACTCAGCTCTTGAAAACAACCCTGCATTGTTCTTGTTGTGTCCGACTCCTGTGTTTGTAGACTCTAAGAAGAGGAGTGTTATAGTGAAGAGTGGAGGAGGGAAGGGAAGGGAAAGGAAAGGAAAGGAAAGGAGTGGCGTTGGCAAACTGAACCAACGGGGGTGGTCTGCTCTGTTGCACGCAGGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCGCCGTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTCGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAGGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCACCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGGGTGGGGATAGGACAATAGAAGAAGAGTGGAGGCCGGAGGGGGAGGAGAAAGTGGATGTTGAAAGGGAAATGGAGAGGAAAGGGAATTTTGATTATATATGTTAA | 2313 | 51.36 | MIADAITPPDNSDRIRHQLREHLLVVNEEIENGGVDGPVKIRIRNLTKLSNGMEDPILRGISVDIPKGKIVGIIGPSGGGKSTTLRALNRLWEPPAGTVFLDGHDIVNLDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGEKLSDDEVHKLLNLADLDSSFFSKIGSELSVGQAQRVALARTLANAPEVLLLDEPTSALDPISTENIEDVLVKLKKKWGLTIARLSKFYRRTNSAKPSTPWPSSFLNSALENNPALFLLCPTPVFVDSKKRSVIVKSGGGKGRERKGKERSGVGKLNQRGWSALLHAGPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRGSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADVGGDRTIEEEWRPEGEEKVDVEREMERKGNFDYIC | 770 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 27338831 | 27342800 | - | ClCG06G013930.1 | Cla06g01384 | 275576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01384 | 770 | SUPERFAMILY | RING/U-box | 480 | 546 | - | - | |
| Cla06g01384 | 770 | MobiDBLite | consensus disorder prediction | 581 | 618 | - | - | |
| Cla06g01384 | 770 | ProSiteProfiles | Zinc finger RING-type profile. | 499 | 541 | IPR001841 | - | |
| Cla06g01384 | 770 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 226 | IPR027417 | - | |
| Cla06g01384 | 770 | Pfam | Ring finger domain | 498 | 541 | IPR001841 | - | |
| Cla06g01384 | 770 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 391 | 717 | - | - | |
| Cla06g01384 | 770 | MobiDBLite | consensus disorder prediction | 597 | 618 | - | - | |
| Cla06g01384 | 770 | SMART | AAA_5 | 67 | 394 | IPR003593 | - | |
| Cla06g01384 | 770 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 391 | 717 | - | - | |
| Cla06g01384 | 770 | SMART | ring_2 | 499 | 540 | IPR001841 | - | |
| Cla06g01384 | 770 | Pfam | ABC transporter | 58 | 201 | IPR003439 | GO:0005524 | |
| Cla06g01384 | 770 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 473 | 548 | IPR013083 | - | |
| Cla06g01384 | 770 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 41 | 290 | IPR003439 | GO:0005524 | |
| Cla06g01384 | 770 | CDD | RING-H2_EL5_like | 498 | 541 | - | - | |
| Cla06g01384 | 770 | ProSitePatterns | ABC transporters family signature. | 173 | 187 | IPR017871 | GO:0005524 | |
| Cla06g01384 | 770 | CDD | ABC_PstB_phosphate_transporter | 41 | 227 | IPR005670 | GO:0005315|GO:0016020|GO:0035435 | |
| Cla06g01384 | 770 | Gene3D | - | 36 | 230 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01569 | Cla-Chr2:30347714 | Cla06g01384 | Cla-Chr6:27338831 | 1.11E-28 | dispersed | |
| Cla03g01043 | Cla-Chr3:20034197 | Cla06g01384 | Cla-Chr6:27338831 | 6.88E-24 | dispersed | |
| Cla06g00326 | Cla-Chr6:4181289 | Cla06g01384 | Cla-Chr6:27338831 | 4.71E-15 | dispersed | |
| Cla06g00886 | Cla-Chr6:13622539 | Cla06g01384 | Cla-Chr6:27338831 | 1.69E-41 | dispersed | |
| Cla06g01384 | Cla-Chr6:27338831 | Cla05g01535 | Cla-Chr5:25551563 | 2.20E-26 | dispersed | |
| Cla10g00477 | Cla-Chr10:6286510 | Cla06g01384 | Cla-Chr6:27338831 | 1.31E-14 | dispersed | |
| Cla11g01406 | Cla-Chr11:27613808 | Cla06g01384 | Cla-Chr6:27338831 | 1.90E-24 | dispersed | |
| Cla06g01384 | Cla-Chr6:27338831 | Cla06g01284 | Cla-Chr6:26198480 | 1.21E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01384 | K19041 | - | csv:101203916 | 625.55 |