Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01388 ATGAAGAACTTACCTCTCTACATCCTCCGATCTCCTCCGCGTTCTCTTCTCCGGTTGCCGCTACCGGTCGCCAGCCCCTTCTTGTCTCACCTCTCCTATTTCATAACCATCTCTCTCTTAGGCTTTGGAGCTCTAAAGCTCACCAAAACTAGAAACTCCTCCTCCCCAAATGACCTCAACATTTTCTTCACCTCCGTCTCTGCCGTCTCCGTTTCAAGCATGTCTGTCATTGAAATGGAAGTTTTTTCCAATTTCCAACTCCTCATCATCACCACCCTCATGTTCCTCGGCGGCGAAGTCTTCGTCTCTGCCGTCGGGTTCCAACTCTCTCGCCGGTTCAAATACTTGAACGAGAAAAACCAAGTCGATTCGGCTCGGTCCATTGAGATGGAAAGTGGGACGTCGTCATCAACGACGGCCACCATTGATGAGTTGAGTATCTCAAAATCATGTTCAAAGCTTTTGGGTCGTACGATAATTGGATATCTTTTGACGACAAATGGTGTTGGTTCTTGTTTAATCTTCATTTACATCATCACGATCCCCCATGCAAAGCAAGTGCTTGAAAGCAAAGGCATCAACTTCCTTACTTTTTCAATTTTTAGTACAGTTTCTACTTTTACCAACTGTGGCTTCATACCTACTAATGAAAATATGATCGCTTTCAAGAACAACTCTGGCCTTTTGCTCATACTCATCTCGCAGGTGTTGTTGGGAGGTTGTTTATATCCGGTGGGTCTCCGGTTGGCAATAATGGCGGCGGCGAAGGTGACGGGGAAGAAGGAATGGAGATACATATTGAAGAACTACTCAGAGATGGGGTATTCTCATCTCTTGTCGGGGCTCCGGTGTGGATTTCTGGCCGTGACGGCGGTGGGATTCATAATTTTGCAATTGATTATCTTTTGCTCATTGGAATGGAACAACTCCGCCGGAATTTGGGATGGCCTGAATCCCTACCAGAAGTTTGTGGGATCACTTTTTCAGGTGACAAACTCAAGACATGCCGGAGAGTCGGTGGTGGATATCTCGGTCATCTCGCCCGCGATCTTGGTAGTTTTTGTTGTCATGATGTATCTCCCACCATACACAACCTTTTTACCCATAAGGAACAAAGAGATAGCTTCAATGTCACATGGGAAGGACAAAAGACAACACTTAGTGGAATTATTCACATTCTCACAGCTCTCCTATTTGGCCATTTTTATCATTCTCATATGCATCACAGAGAAAGAAAAGCTAAGAGATGATCCCCTTAACTTTACCGTTCTCAACATCACCCTTGAAGTGATCAGTGCATATGGAAATGTTGGGTTCTCAAGTGGGTATAGCTGCAAAAGACAAGTAAAAGTTGATAGCTCTTGCAAAGATGCATGGTATGGATTTGCTGGAAGATGGAGTCCAAAGGGAAAATTCATTCTAATTCTTGTCATGATCTTTGGAAGAATGAAAAGTTTTAGTATGCATAGTGGTAGAGCTTGGAAATTATCATGA 1494 44.11 MKNLPLYILRSPPRSLLRLPLPVASPFLSHLSYFITISLLGFGALKLTKTRNSSSPNDLNIFFTSVSAVSVSSMSVIEMEVFSNFQLLIITTLMFLGGEVFVSAVGFQLSRRFKYLNEKNQVDSARSIEMESGTSSSTTATIDELSISKSCSKLLGRTIIGYLLTTNGVGSCLIFIYIITIPHAKQVLESKGINFLTFSIFSTVSTFTNCGFIPTNENMIAFKNNSGLLLILISQVLLGGCLYPVGLRLAIMAAAKVTGKKEWRYILKNYSEMGYSHLLSGLRCGFLAVTAVGFIILQLIIFCSLEWNNSAGIWDGLNPYQKFVGSLFQVTNSRHAGESVVDISVISPAILVVFVVMMYLPPYTTFLPIRNKEIASMSHGKDKRQHLVELFTFSQLSYLAIFIILICITEKEKLRDDPLNFTVLNITLEVISAYGNVGFSSGYSCKRQVKVDSSCKDAWYGFAGRWSPKGKFILILVMIFGRMKSFSMHSGRAWKLS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27402051 27407420 + ClCG06G013970.2 Cla06g01388 275580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01388 497 Pfam Cation transport protein 47 488 IPR003445 GO:0006812|GO:0008324|GO:0055085
Cla06g01388 497 PANTHER SODIUM TRANSPORTER HKT1 20 497 - -
Cla06g01388 497 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 20 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01386 Cla-Chr6:27355458 Cla06g01388 Cla-Chr6:27402051 1.06E-128 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01388 K24976 - csv:101206239 817.764