Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01398 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTCTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGGGAATTGGGCTACGGGGTCTTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCCTTCTCAGGTTTATGTGGACCGCCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCGTCGTCTAAAGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCGTGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGATAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCCTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACATCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTACGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCATGCTCATGAGCTAATGGTGGCTTACAAATCGCCGGAGTATTCGCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGTGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCAAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGACCAACCAAGAGCAGTGAGGGTGAAATGTTGAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCCTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATAATGGGAAAATTTAATGTGTGTTTGCTTTGGCTAAACAATGCTTAG 1989 44.34 MARPSTPPPTALFLILILIISLVEQLIVSCTASTDAEALLKFKSSLEITNDALGNWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSKEEDPAHGKSPCASELDPGVGSKSPDRGSSHGSGSGKRSADSAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPTKSSEGEMLKLLRIAMACCESDFEKRLDLREVLEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTIMGKFNVCLLWLNNA 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27520077 27522726 + ClCG06G014080.2 Cla06g01398 275590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01398 662 Gene3D Phosphorylase Kinase; domain 1 307 415 - -
Cla06g01398 662 SUPERFAMILY Protein kinase-like (PK-like) 344 613 IPR011009 -
Cla06g01398 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 626 - -
Cla06g01398 662 MobiDBLite consensus disorder prediction 304 318 - -
Cla06g01398 662 Gene3D Ribonuclease Inhibitor 149 239 IPR032675 -
Cla06g01398 662 MobiDBLite consensus disorder prediction 277 321 - -
Cla06g01398 662 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Cla06g01398 662 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 11 626 - -
Cla06g01398 662 ProSiteProfiles Protein kinase domain profile. 340 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01398 662 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672|GO:0006468
Cla06g01398 662 Gene3D Ribonuclease Inhibitor 34 148 IPR032675 -
Cla06g01398 662 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cla06g01398 662 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Cla06g01398 662 SUPERFAMILY L domain-like 31 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01398 Cla-Chr6:27520077 Cla08g01254 Cla-Chr8:25459986 0 dispersed
Cla10g00877 Cla-Chr10:20051129 Cla06g01398 Cla-Chr6:27520077 2.91E-103 dispersed
Cla06g01398 Cla-Chr6:27520077 Cla07g01399 Cla-Chr7:31128770 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80651 PF07714 PK_Tyr_Ser-Thr 4.70E-30 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01398 - - csv:101213261 1090.1