Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01400 ATGGAAAATGTGTGCATCGCTCTCTTCATTCTCTTAATTTCATTTTTCTCATTTGCCCTTTTCATCCTCTTCTATCGTCACAAGGCTCAATTCGCCTACCCCAACATTCCCCCGGGCAGCATCGGTTACCCGATCGTAGGGGAGACTCTACAAATGGTTGCCCACGAGAGGAACGGGCAGCCGGAGAATTTTATCTTTGAGCGCGCCGCCAAGTACAAGACGGAGATTTTCACGACTTCCGTCCTAGGGGAGCCGACCGCCGCCTTCTGCTCCGCCGCGGGGAATAAGCTTCTGTTCTCAAACGAGCAGAATTTAGTGACTCCGTGGTGGCCGAAATCTGCTGATAAAGTGTTTCCTTCTACCGTTAAGTATAATACGAATGAAGAAGCAAAGAGAACCAAGAATTTACTCCCTCAATTTATAAAGCCAGAAGCGCTTCGGCGATATGTTGGAGTGATGGACTCTATTGCTCAAAAGCACTTCGCTTCCATGTGGGAAAATAAGAAAGAAATCGTCGTCGTTTCCACTCTAAAAGATTATACGTTCTCCCTTGCATGTCGATTGTTCATGAGCATGGAGGATGTAAACGAGGTGCAAAGAATCTTCAAGAGGTTTGAAGAGATAGCGTCAGGGATTATATCAGTACCGATAGATTTTCCGGGATCAATGTTCAGGAAAGCCATAAAAGCATCGGAGTTTGTGAGGAAGGAGCTGTTGGGGATCATAAGGCAGCGAAAAACAGATCTAGGCGAAGGGAAGGCATCAGCGACACAAGACATTCTATCACACATGCTTTTGGCCATTGACAGCAATGGCCAATTCATTCATGAAGAAGATATTGCCGCTAAAATTCTTGGTCTACTCGTCGGTGGACACGATACCGGCGTCTGTACTTGCACTTTCGTTGTCAAGTACTTGGCTGCTCTTCCCCACGTCTACGAAAATGTCTACAATGAGCAAATGGAGATAGCAAGATCAAAGACAGCAGGTGAACTATTGACTTGGGAAGATCTTCAGAAGATGAAGTATTCATGGAATGTAGTTTGTGAAGTGCTTAGACTCTTCCCTCCAGTTCAAGGAGCTTTCAGGGTTGCCCTCACTGACTTTGTCTTTAATGGCTTCTATATCCCCAAGGGCTGGAAGTTGTATTGGAGTGCGGCAGCAACACACAAAAACGCAGAGTACTTTGCGGAGCCATTAAAGTTCGAGCCAAAGAGGTTCGAAGGGAAAGGTCCGGCTCCGTTCACGTACGTGCCGTTCGGGGGTGGTCCAAGAATGTGCCCCGGCAAAGAGTACGCGCGGCTCGAGGTCCTTGTTTTCATGCACCATTTGATCAAGCGTTTCAGACTCCAACTTTGCATTCCCCATGAAGAGGTCACCGCCAATCCCATTCCCACTCCCCTCCAAGGCCTTCCGGTTCGTCTCTTTCCCCACGCGCCGCCGCCCCATTATTCTTCGTCCCCCTAA 1467 48.06 MENVCIALFILLISFFSFALFILFYRHKAQFAYPNIPPGSIGYPIVGETLQMVAHERNGQPENFIFERAAKYKTEIFTTSVLGEPTAAFCSAAGNKLLFSNEQNLVTPWWPKSADKVFPSTVKYNTNEEAKRTKNLLPQFIKPEALRRYVGVMDSIAQKHFASMWENKKEIVVVSTLKDYTFSLACRLFMSMEDVNEVQRIFKRFEEIASGIISVPIDFPGSMFRKAIKASEFVRKELLGIIRQRKTDLGEGKASATQDILSHMLLAIDSNGQFIHEEDIAAKILGLLVGGHDTGVCTCTFVVKYLAALPHVYENVYNEQMEIARSKTAGELLTWEDLQKMKYSWNVVCEVLRLFPPVQGAFRVALTDFVFNGFYIPKGWKLYWSAAATHKNAEYFAEPLKFEPKRFEGKGPAPFTYVPFGGGPRMCPGKEYARLEVLVFMHHLIKRFRLQLCIPHEEVTANPIPTPLQGLPVRLFPHAPPPHYSSSP 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27533301 27538062 + ClCG06G014100.2 Cla06g01400 275592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01400 488 Gene3D Cytochrome P450 26 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 Pfam Cytochrome P450 37 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS P450 superfamily signature 427 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS E-class P450 group I signature 417 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PRINTS E-class P450 group I signature 427 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01400 488 PANTHER CYTOCHROME P450 26 9 476 - -
Cla06g01400 488 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 9 476 - -
Cla06g01400 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506|GO:0016705
Cla06g01400 488 SUPERFAMILY Cytochrome P450 31 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01495 Cla-Chr5:24133776 Cla06g01400 Cla-Chr6:27533301 3.17E-114 dispersed
Cla05g01497 Cla-Chr5:24186335 Cla06g01400 Cla-Chr6:27533301 8.64E-107 dispersed
Cla06g01400 Cla-Chr6:27533301 Cla05g02039 Cla-Chr5:32102232 5.04E-73 dispersed
Cla08g01571 Cla-Chr8:28354854 Cla06g01400 Cla-Chr6:27533301 5.38E-42 dispersed
Cla06g01400 Cla-Chr6:27533301 Cla03g01134 Cla-Chr3:23523395 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01400 K20667 - tcc:18589551 653.669