Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01412 ATGGCGTTCGTTGGGTTTATTGGCTTGGACGATCTTAGCCTCCAATTGGCTACTTCACTAATCCGTGCCGGTTACAGAGTCAAAGCTTTTGAGATAAATCAGGTCTGGACAGATACATTTTTGAAGTCAGGCGGAATAAGCTGTGCCAGTATTGTAGAGGCAGCGGCAGATGTTGCGGCATTGCTTGTATTGAATAGTCATTTGAATATGATTAATGATTTATCTTTTGGGGATGTTCTCAGAGGGTTGCATGAGGATGTTGTTGTTGTCCTTGTCCGTTCAACTCCACTGGGGAATGATGTCCAGAACTTGGAAAAACTTTTTACAGGCAATTTCACTCTTACTTTCTTATGTCTGGGGTTTGAGGCTACAAAGGTTTCTGCTGCCAAAGATCCACCTCCCCTATATTTCTTATTTGATTACAAGATACACAATCTTGTTGATGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGATGGTCAGCTCTTGACAGTAACCTCTGGAAGGGCAGCTGCAATTTCTAGAGCTCGACCTTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAGAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCGCTGGAAGCTATTTCCCTGGGTGTTAAAGCTGGAATTCACCCCTGGATAATCTATGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATTATGTTCCCCACTTGTTAAAGGGTGATATTAGACCTGAGTTGTTGAGAAGTTTGGTTCAAGCTATGGGGATTGTCATGGATAAGGCCAAGTCGCACACTTTTCCTCTTCCTCTCCTAGCAGTTACTCATCAGCAACTTATGCTGGGTTCTTCCCATGGCTATGGAGATGAGGATGGCTTGTTAGAACAGGCGTGGAAAAGTGCATATGGAGTAAGTATTTCAAATGCAGCTAATACAGAAGTTTACAGCCCTGAGCAACTAGCCAATGAAATAACTTCTAAATCAAGTTCTGTTAATCGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCACCTTATCAGATCAGCTTTTTGTGTGACTGGTTATGATGTGTTTAAACCAACCCTAACTAAATTCACTGATGCTGGTGGCTTGATTGGAAACTCGCCTGCAGAAGTTAGTAAAGATGTTGAAGTGCTCGTAATTATGGTGACAAATGAAGCACAAGTGGAGAGCGTTCTGTATGGGGAAGCTGGGGCTATCTCTGCCCTTCCATATGGAGCTTCGATTATTCTATCATCTACTGTTTCTCCTGGATATGTGCGGCAACTAGAACAACGCTTGGGAAATGAGGGCAAAAATTTGAAATTGGTTGATGCTCCTGTTTCTGGTGGTGTTCAAAGGGCCTCAAAGGGAGCCCTTACGATAATGGCCTCGGGGACAAATGAAGCTCTTAGGAGCGCTGGTTCAGTCCTCTCAGCCTTAAGTGAGAAGCTTTATGTAATTAAAGGAGTCTGCGGGGCAGGAAGTGGTGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGAGCTCGACTTGGTCTCAATACTCGAATTTTATTTGACGTCATCGTAAATAGTCAGGGAACGTCCTGGATGTTTGAAAACCGAGTTCCGCATATGCTGGACGATGATTATACACCATACTCTGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCCGTGACTGCACATCAATTGTTTCTGGCAGGTTCTGCTGCGGGCTGGGGTCGTCAAGATGATGCTGGAGTAGTAAAGGTTTATGAGACGCTTACAGGTGTCAAGGTTAAAGGAAAGCCTCCCACTCTTAAGAAAGAAGCTGTATTGAGGTCTCTTCCACCTGAATGGCCGCAAGATGTGATTGCTGATATTCAACAACTGAATGAAAGGAATTCAAAGATTTTGGTTGTGCTGGACGATGATCCAACGGGAACCCAAACTGTTCATGATATTGATGTTTTAACTGAATGTTGTTTAGCAGCGTATCAGCCAACTTCATACAATGAATTTATTGTTTTTCATTTCATTAATGTAAGGTCCCTTGATTCACTTATTGAGCAATTTCGTAAAAAGCCGAAATGCTTTTTTATATTGACCAACTCAAGGTCACTGAGCTCTGAAAAGGCTGGGGCATTAGTTAAACAAATCTGCACTAATTTACGTGCTGCATCTGAGTGTGTCAAGCATAGTGACTACATGGTAGTTTTGAGAGGTGATTCAACCTTACGAGGTCATTTTCCTGAGGAAGCCGATGCTGCTATGTCAGTGTTAGGTGTAGTGGATGCATGGATCATCTGCCCGTTCTTTTTCCAAGGAGGCCGTTATACTGTTGACGATATACACTATGTTGCAGATTCTGATGAGCTTATTCCTGCAGGGGACACTGAGTTCGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGACGCATACAAGCTGGCACTGTTACCTCCATTTCTATTCAACTTTTAAGAAAGGGTGGCCCAGATGCTGTTTGCGAGCACCTATGCAGCTTAGAGAAGGGAATGACATGTATAGTTAATGCCGCTAGTGAAAGGGATATGGCAGTCTTTGCAGCTGGAATGATTAAGGCAGAAATGAAGGGCAAGAATTTCTTATGCCGAACTGCTGCCAGTTTTGTATCAGCCAGGGTTGGGATCACTCCAATAGCCCCTCTTTTGCCAAAGGATGTTGGAATTGATAAAGAGAGAAATGGTGGTCTTATTATTGTGGGTTCATATGTTCCAAAAACTACTAAACAGGTTCAAGAGTTGAAGTTGCGATGTGGCCCATTTTTAAGATGTATTGAGGTTTCTGCTGCTAAACTTTCCATGAGTACAGAGGAAGAGAGGGAGGAGGAAATTAGAAAAGCAGCTATGTTTGCTGATATTTATCTCAGGGCTCGTAAAGATACTCTGATTATGACTAGTAGAGAACTTATCAGGGGAAAAAGTCCCCTGGAGAGTTTAGAAATCAACATCAAAGTAAGTGCTGCGCTAGTGGAAATAGTTCAACAGATTACTACAAAACCTCGTTACATCCTTGCAAAGGGTGGAATCACCTCATCAGACATTGCTACAAAGGCTCTTGGAGCAAAATGTGCTAGGATAATTGGACAGGCCTTTTCTGGGGTTCCCTTGTGGCAACTAGGCCATGAAAGTAGACATCCTGGAGTTCCCTACATTGTTTTCCCAGGTAATGTTGGAAGCAGTGAAGCACTAGCAGAAGTAGTCAGTACTTGGGCTCTTCCTGCCAGACTTTCCTCCTCAAAAGAGATTCTTCTTAGTGCAGAACAAGGTGGGTATGCAGTGGGAGCTTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACACAGTCCTGCCATATTACAGATCCATCCAGGTGCCTTAAAGCAAGGAGGGCTCTCTTTGGTTTCGTGCTGTATTGCTGCTGCTGAACGAGCCAGTGATCTGGTTTTTAGTTTTAAGTGTAGATTGAATATTCCTGAACTATTACAGGTACCAATTACTGTTCACTTTGATCACGGAAATTCAATGCAAGATCTGTTAGAAGCTGTTGAATTGGGATTTGATTCAGTAATGGCAGATGGTTCACATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCAATCAAAGAACATGCTAGTGGAAGCTGAACTTGGAAGGTTATCAGGAACAGAAGATGACTTGACCGTCGAAGATTATGAAGCAAGGTTGACCGATGTTTCGCAGGCTCAACAGTTTATTGAGGAGACTGGCATAGATGCCCTGGCAGTGTGCATTGGTAATGTCCATGGAAAATATCCAGCAGGTGGCCCGAATCTCAGACTCGATCTGCTCAAGGACTTGCATGCTTTGACCTCAAAAAAAGAAGTCTTCCTGGTGCTGCACGGAGCTTCAGGTTTGCCTGAGAACCTCATAAAGGCTTGCATCGAGAATGGAGTGAGAAAGTTCAACGTAAATACTGAGGTTCGCAAAGCATACTTGGATTCGCTGAATAACCCCAGCAAAGATTTAGTCCATGTGATGGAATCAGCAAAAGAATCCATGAAAGCTGTGATTGCAGAGAAGATGCATCTATTTGGCTCTGCAGGAAAAGCATTCTGA 4323 42.86 MAFVGFIGLDDLSLQLATSLIRAGYRVKAFEINQVWTDTFLKSGGISCASIVEAAADVAALLVLNSHLNMINDLSFGDVLRGLHEDVVVVLVRSTPLGNDVQNLEKLFTGNFTLTFLCLGFEATKVSAAKDPPPLYFLFDYKIHNLVDAYVFKGVSEALDGQLLTVTSGRAAAISRARPFLSAMCGKLFIFEGEVDAGSRTNMVIELLKGIHFVASLEAISLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDIRPELLRSLVQAMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDEDGLLEQAWKSAYGVSISNAANTEVYSPEQLANEITSKSSSVNRVGFIGLGAMGFGMATHLIRSAFCVTGYDVFKPTLTKFTDAGGLIGNSPAEVSKDVEVLVIMVTNEAQVESVLYGEAGAISALPYGASIILSSTVSPGYVRQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTNEALRSAGSVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFDVIVNSQGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEAVLRSLPPEWPQDVIADIQQLNERNSKILVVLDDDPTGTQTVHDIDVLTECCLAAYQPTSYNEFIVFHFINVRSLDSLIEQFRKKPKCFFILTNSRSLSSEKAGALVKQICTNLRAASECVKHSDYMVVLRGDSTLRGHFPEEADAAMSVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVTSISIQLLRKGGPDAVCEHLCSLEKGMTCIVNAASERDMAVFAAGMIKAEMKGKNFLCRTAASFVSARVGITPIAPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGPFLRCIEVSAAKLSMSTEEEREEEIRKAAMFADIYLRARKDTLIMTSRELIRGKSPLESLEINIKVSAALVEIVQQITTKPRYILAKGGITSSDIATKALGAKCARIIGQAFSGVPLWQLGHESRHPGVPYIVFPGNVGSSEALAEVVSTWALPARLSSSKEILLSAEQGGYAVGAFNVYNLEGVQAVVAAAEEQHSPAILQIHPGALKQGGLSLVSCCIAAAERASDLVFSFKCRLNIPELLQVPITVHFDHGNSMQDLLEAVELGFDSVMADGSHLPFKENIAYTKFISSLAQSKNMLVEAELGRLSGTEDDLTVEDYEARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPAGGPNLRLDLLKDLHALTSKKEVFLVLHGASGLPENLIKACIENGVRKFNVNTEVRKAYLDSLNNPSKDLVHVMESAKESMKAVIAEKMHLFGSAGKAF 1440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27672074 27697357 + ClCG06G014240.1 Cla06g01412 275604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01412 1440 Gene3D - 197 312 IPR013328 GO:0016491
Cla06g01412 1440 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 349 507 IPR006115 GO:0050661
Cla06g01412 1440 Gene3D - 511 643 IPR013328 GO:0016491
Cla06g01412 1440 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 514 641 IPR008927 -
Cla06g01412 1440 Gene3D Aldolase class I 1140 1440 IPR013785 -
Cla06g01412 1440 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 725 1363 - -
Cla06g01412 1440 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 310 703 - -
Cla06g01412 1440 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 352 365 IPR002204 GO:0016491
Cla06g01412 1440 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 514 634 IPR029154 GO:0051287
Cla06g01412 1440 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 197 307 IPR029154 GO:0051287
Cla06g01412 1440 Gene3D - 2 192 - -
Cla06g01412 1440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 349 512 IPR036291 -
Cla06g01412 1440 CDD TBP_aldolase_IIB 1148 1437 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cla06g01412 1440 PANTHER ALDOLASE-RELATED 2 112 - -
Cla06g01412 1440 PANTHER ALDOLASE-RELATED 310 703 - -
Cla06g01412 1440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 188 IPR036291 -
Cla06g01412 1440 Gene3D - 955 1137 IPR042213 -
Cla06g01412 1440 SUPERFAMILY Aldolase 1146 1439 - -
Cla06g01412 1440 Gene3D - 342 510 - -
Cla06g01412 1440 TIGRFAM cbbA: ketose-bisphosphate aldolase 1145 1439 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cla06g01412 1440 Pfam Sugar-binding N-terminal domain 681 940 IPR010737 -
Cla06g01412 1440 Gene3D - 680 942 IPR037051 -
Cla06g01412 1440 Pfam Nucleotide-binding C-terminal domain 965 1131 IPR031475 -
Cla06g01412 1440 SUPERFAMILY YgbK-like 681 1135 - -
Cla06g01412 1440 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 146 307 - -
Cla06g01412 1440 PANTHER ALDOLASE-RELATED 146 307 - -
Cla06g01412 1440 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 2 112 - -
Cla06g01412 1440 PANTHER ALDOLASE-RELATED 725 1363 - -
Cla06g01412 1440 Pfam Fructose-bisphosphate aldolase class-II 1147 1438 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cla06g01412 1440 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 197 307 IPR008927 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01412 - - - bhj:120070914 2487.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01412 Cla-Chr6:27672074 Cla11g00188 Cla-Chr11:2232298 1.32E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01412 Cla_Chr06 FPKM 8.260841 10.483662 8.430778 8.926908 9.554697 9.070923 9.798198 11.636955 13.973397 12.504185