Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01415 ATGGCTAAACCCTTTTCGTTTCCGTCAAAATCCACCGAACACACGGTCATGGCAGCTCCAAAGTTCTTGCAGTTCGGCACTGCAATCTCCCGAACTACACCCAGAGCTCTATCGCCCCTCCTCTTCCCCAGAAGACTCCCGCCGAAGCTCATATCCTTCATCAGGTGCAGTTCTTCTACCGCGCTTGATGCCGCCGGCAGCAGCGGCGCTGATGCTCCCCAACAACACTCCACCCTCACTCACCACCCATGGCCTGAATGGGTTTCCTTCGTCGATGGCCTGAGGACCAAGGGTTACTTGATCGAACCTCCTTCAGAAGATGCAACTACGCCATCTGGGACTGATTACAGCGACATGAACGTGTTGAAGGATGCTTGCGTCAGCTTTGCGCGCGATCGATACGATATTTTCAAATCATTGTCCACAGATGATATTCAAACGATTGTGAAGGATGGATGCCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAAAGGTTGAGGGCTTATGTGCAACTAGATGAAGGGGACGTTTGTAGTACCTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGATCCCCTTGTTTTGTCTGGAGGGAACAAACCTTCGGGTAGAGAGCATGTCGAAGTCTCTGTGAGGAAATTACTTTCCGAGCTGTTGGAACTAAGTGAAAAACCCCTTGATGCAGCAGCAATGAAGAAGGATACAAAATCTCCCCAAAGAAAAGAAAAACTATCAAAATTTACAAATGGTGCCTCAACTCAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTACGAAATGCAACTTTTTGAATTTTGCTAGAAACATAAGATGTTTAAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTTCAAATGATATTGAAATGAAGAACGGAGATTGGATCTGTCCAGAATGCAACTTTATGAACTTCTCAAAAAATATTCGCTGCTTAAAGTGCAAAACAGAGGGGCCGAGGAAGATTAATGACAAAGAAATCGAAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTACATTCATGAACTTTGCCAATAACATGAAATGTTTGCGTTGCCGAGAACATCGTCCGAGGAGAGATATGAATCCAGGAGAATGGGAATGTCCTTCGTGTGATTTTTTGAATTACAGAGGGAACATGAGCTGCCGCAAGTGCAATGTTGAGCGTCCTAAACAAGAAATAAGTGCCGAGTACACAGAGCAACTATGGAAGTCACCCAGGGAAAGATGA 1332 44.89 MAKPFSFPSKSTEHTVMAAPKFLQFGTAISRTTPRALSPLLFPRRLPPKLISFIRCSSSTALDAAGSSGADAPQQHSTLTHHPWPEWVSFVDGLRTKGYLIEPPSEDATTPSGTDYSDMNVLKDACVSFARDRYDIFKSLSTDDIQTIVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCDRAYVILKETEATARTVDVARLLLTYALDPLVLSGGNKPSGREHVEVSVRKLLSELLELSEKPLDAAAMKKDTKSPQRKEKLSKFTNGASTQDVEMKRGDWMCTKCNFLNFARNIRCLKCNEDGPKRVRSNDIEMKNGDWICPECNFMNFSKNIRCLKCKTEGPRKINDKEIEMKKGDWICPQCTFMNFANNMKCLRCREHRPRRDMNPGEWECPSCDFLNYRGNMSCRKCNVERPKQEISAEYTEQLWKSPRER 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27709183 27713499 - ClCG06G014270.1 Cla06g01415 275607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01415 443 ProSitePatterns Zinc finger RanBP2-type signature. 367 386 IPR001876 -
Cla06g01415 443 ProSiteProfiles Zinc finger RanBP2 type profile. 285 314 IPR001876 -
Cla06g01415 443 PANTHER ZINC FINGER PROTEIN 349 440 - -
Cla06g01415 443 PANTHER ZINC FINGER PROTEIN 56 355 - -
Cla06g01415 443 Gene3D - 316 354 - -
Cla06g01415 443 Gene3D - 355 392 - -
Cla06g01415 443 Gene3D - 393 427 - -
Cla06g01415 443 Gene3D - 276 315 - -
Cla06g01415 443 PANTHER ASPARAGINE-RICH PROTEIN 349 440 - -
Cla06g01415 443 PANTHER ASPARAGINE-RICH PROTEIN 56 355 - -
Cla06g01415 443 ProSiteProfiles Zinc finger RanBP2 type profile. 324 353 IPR001876 -
Cla06g01415 443 SUPERFAMILY Ran binding protein zinc finger-like 317 352 IPR036443 -
Cla06g01415 443 MobiDBLite consensus disorder prediction 255 269 - -
Cla06g01415 443 MobiDBLite consensus disorder prediction 255 274 - -
Cla06g01415 443 ProSitePatterns Zinc finger RanBP2-type signature. 400 419 IPR001876 -
Cla06g01415 443 SMART zf_4 287 311 IPR001876 -
Cla06g01415 443 SMART zf_4 326 350 IPR001876 -
Cla06g01415 443 SMART zf_4 398 422 IPR001876 -
Cla06g01415 443 SMART zf_4 365 389 IPR001876 -
Cla06g01415 443 SUPERFAMILY Ran binding protein zinc finger-like 355 392 IPR036443 -
Cla06g01415 443 Pfam Zn-finger in Ran binding protein and others 286 308 IPR001876 -
Cla06g01415 443 Pfam Zn-finger in Ran binding protein and others 363 387 IPR001876 -
Cla06g01415 443 Pfam Zn-finger in Ran binding protein and others 324 352 IPR001876 -
Cla06g01415 443 ProSiteProfiles Zinc finger RanBP2 type profile. 396 425 IPR001876 -
Cla06g01415 443 ProSiteProfiles Zinc finger RanBP2 type profile. 363 392 IPR001876 -
Cla06g01415 443 SUPERFAMILY Ran binding protein zinc finger-like 394 426 IPR036443 -
Cla06g01415 443 SUPERFAMILY Ran binding protein zinc finger-like 277 313 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01415 - - - csv:101221680 716.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00635 Cla-Chr1:7336305 Cla06g01415 Cla-Chr6:27709183 3.00E-70 dispersed
Cla02g01536 Cla-Chr2:29932335 Cla06g01415 Cla-Chr6:27709183 1.86E-24 dispersed
Cla06g01415 Cla-Chr6:27709183 Cla11g01695 Cla-Chr11:30555338 5.61E-12 dispersed
Cla06g01415 Cla-Chr6:27709183 Cla10g01621 Cla-Chr10:31793392 3.74E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01415 Cla_Chr06 FPKM 1.208003 1.191362 0.091465 0.23596 2.891016 3.162077 2.17304 0.0 0.0 0.0
Cla06g01415 Cla_Chr00 FPKM 1.012804 1.068623 0.078689 0.245667 2.488198 2.792486 2.137057 0.0 0.0 0.0
Cla06g01415 Cla_Chr00 FPKM 1.113052 1.137982 0.086478 0.142996 2.584746 2.756784 2.04509 0.0 0.0 0.0
Cla06g01415 Cla_Chr00 FPKM 0.622999 1.287045 0.0 0.0 0.78012 0.948183 1.043353 0.0 0.0 0.0