Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01417 ATGGTAATAATCAGATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAGAACACATGATGCAGCTTCTCGTACGTCTCCAATAGTTTCTGCTCTTGTTGAAGGAGGAGCTACTTGCATTGGAAAAACTGTTACCAATGAATTGTCAATGGGGCTTGATACGGAAGTTCATAAGATATGTGTCCTTTGGTATGTTATCAACAGGAGCTGTTTATTTAGTTTAGAGTCGAAACCATATATTTCATTGTTTGCATTACATTTAATTTTTCTTAACCTCAGCATCAGTGGAGAAAACAAGCATTATGGCACACCCACAAATCCTGCATCGCATTCCAGAGTTCCTGGTGGGTCATCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATCTTGTTGACTTCTCTTTGGGTATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTAGGGTTTCGACCTTCACATGGATCTGTTTCCCAAGTTGGAATCATACCTGTTTCGACAACTCTAGACACTGTTGGCAGCTTGGTTCTTTTAGATGAGCACAAGGGGTTGTGTATCTTGTCTCCCTCTTATAAAACTTGTTTGGGCTTCTATTGTACTATGGCAGGAATGTTTGCCAAGGATCCTAATGTCCTGCGTCGTGTTGGCCATGTGCTTTTGCAACTTCCATATGCGGTTCAACGCAATCCTAGACAAATTATTATAGCTGATGATTGCTTTCAACTATTGAAGATACCTGTTGACAGGGTTACTCAGGCAGTGACCAAATCTACTGAGAACCTTTTTGGCAGACAAGTATTGAAGCATGAAAATCTTGGAAGCTATTTGACTTCTAAAGTTCCAAAATTGAAAGAGTTGATTGGGAAAAAGACAAATGGGAATCTAAATTCTTCTTCAATTAGAGTGCTGGCCAATGTGATGCAGACTCTTGAAAGGATTGAATTCAAAGGCAATCATGGGGAATGGATTGACTCAGTGAAACCAGATTTGGATCCTGCTCTAATGGAGCAATTAAATGAGAAGTTGGAGATATCAGATACAACGGTTGAAAACTTCAAGTCTGTTAGAAATGAAACCCGTATGGCTATTAATTCTCTTTTAAAGGTAATCTTCATGAAAAATTTGTCTGCAGGTTGTAGTTTCTTGAACGTCACCTTGCCACTGGGATTTCACGATAATTGTCCTCTATCTGTGTCCTTCTTAGCCAGGCATGGGGCAGATCGCTTTTTACTAGATACTGTGCAGACCATGTATAAGTCTTTACAAGAGGAGGCTGAGGCTGCTTCAAAATCCAAATTCTCAAAGAATGCTGTTACCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGTATTCTTAAACTGTATACCTTCATGCTCTTCAGCTTCATTTACTCATGCAACCTGTTTTCTGATGTGCGTGCTTTCTGCAGTTTGGCCTCTTATAATCGTTCTTGTGGCCATTCCCTCTTCCCTTTTACCAGCATTGTTGGATGGCAATCAAGCATACAAGGAAAAACAGTGGGAGAAGGCTATTGGTTGTTATACCGAAGCCATCAAACTTAACAGCAGAAATGCTACATATTACAGTAATAGGGCTGCAGCATATTTAGAGCTTAGAAGGTTTCACCAAGCAGAGGCAGATTGCAGTAAAGCTATTGACCTGGATAAAAAGGTGATTCGTGCAGGAAATTTTAGTGCTAATGTTAAATCCTATTTACGAAGGGGTACAGCGAGAGAGATGCTTGGTTTTTACAAGGAAGCAATTGAAGATTTTAGTCATGCCCTTGTTCTTGAGCCAACAAACAAAAGAGCATCAATATCTGCAGAAAGATTAAGAAAGCTATTCACAAGTTGA 1884 40.29 MVIIRFEIEGHVTGFGHPDWARTHDAASRTSPIVSALVEGGATCIGKTVTNELSMGLDTEVHKICVLWYVINRSCLFSLESKPYISLFALHLIFLNLSISGENKHYGTPTNPASHSRVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIIPVSTTLDTVGSLVLLDEHKGLCILSPSYKTCLGFYCTMAGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRVTQAVTKSTENLFGRQVLKHENLGSYLTSKVPKLKELIGKKTNGNLNSSSIRVLANVMQTLERIEFKGNHGEWIDSVKPDLDPALMEQLNEKLEISDTTVENFKSVRNETRMAINSLLKVIFMKNLSAGCSFLNVTLPLGFHDNCPLSVSFLARHGADRFLLDTVQTMYKSLQEEAEAASKSKFSKNAVTQEQSAEIAKEKVFLNCIPSCSSASFTHATCFLMCVLSAVWPLIIVLVAIPSSLLPALLDGNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELRRFHQAEADCSKAIDLDKKVIRAGNFSANVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLFTS 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27719843 27730712 + ClCG06G014290.2 Cla06g01417 275609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01417 627 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 95 182 - -
Cla06g01417 627 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 508 626 - -
Cla06g01417 627 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 388 459 - -
Cla06g01417 627 Gene3D Tetratricopeptide repeat domain 503 625 IPR011990 GO:0005515
Cla06g01417 627 ProSiteProfiles TPR repeat profile. 578 611 IPR019734 GO:0005515
Cla06g01417 627 SMART tpr_5 578 611 IPR019734 GO:0005515
Cla06g01417 627 SMART tpr_5 501 534 IPR019734 GO:0005515
Cla06g01417 627 SMART tpr_5 535 568 IPR019734 GO:0005515
Cla06g01417 627 PANTHER AMIDASE 1 6 60 - -
Cla06g01417 627 PANTHER AMIDASE 1 95 182 - -
Cla06g01417 627 Pfam Amidase 96 184 IPR023631 -
Cla06g01417 627 Pfam TPR repeat 508 547 - -
Cla06g01417 627 SUPERFAMILY Amidase signature (AS) enzymes 6 426 IPR036928 -
Cla06g01417 627 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 6 60 - -
Cla06g01417 627 SUPERFAMILY TPR-like 506 615 IPR011990 GO:0005515
Cla06g01417 627 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 212 377 - -
Cla06g01417 627 Coils Coil 420 440 - -
Cla06g01417 627 Gene3D Amidase signature (AS) domain 5 457 IPR036928 -
Cla06g01417 627 PANTHER AMIDASE 1 508 626 - -
Cla06g01417 627 PANTHER AMIDASE 1 212 377 - -
Cla06g01417 627 PANTHER AMIDASE 1 388 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01417 - - - csv:101221204 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01471 Cla-Chr2:29236337 Cla06g01417 Cla-Chr6:27719843 8.24E-19 dispersed
Cla06g01417 Cla-Chr6:27719843 Cla09g01520 Cla-Chr9:30016627 1.68E-65 dispersed
Cla06g01417 Cla-Chr6:27719843 Cla02g01790 Cla-Chr2:32917161 1.18E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01417 Cla_Chr06 FPKM 1.351763 1.124195 58.527828 59.304634 320.252991 306.091156 315.771301 44.288158 47.162907 42.056274
Cla06g01417 Cla_Chr00 FPKM 1.351763 1.124195 58.648094 59.246109 319.941864 306.388397 315.771301 44.286827 47.162907 42.056274