Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01419 | ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTTAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCATCAAGATGGGAAAGCAAGGTCGTGAGTTGAGTGGTGTGTTTTCTGAGCAAGGGTTAACCATAGGAGTAATGAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTGTATGGAATGAAGATCTAACTCTTTCTATCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACTATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA | 597 | 43.72 | MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVIKMGKQGRELSGVFSEQGLTIGVMKLKTRVIKKDVNPVWNEDLTLSISDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 27743172 | 27745901 | + | ClCG06G014320.1 | Cla06g01419 | 275611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01419 | 198 | Pfam | C2 domain | 22 | 128 | IPR000008 | - | |
| Cla06g01419 | 198 | Gene3D | C2 domain | 18 | 197 | IPR035892 | - | |
| Cla06g01419 | 198 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 11 | 197 | - | - | |
| Cla06g01419 | 198 | SMART | C2_3c | 23 | 136 | IPR000008 | - | |
| Cla06g01419 | 198 | CDD | C2_ArfGAP | 21 | 182 | - | - | |
| Cla06g01419 | 198 | ProSiteProfiles | C2 domain profile. | 8 | 137 | IPR000008 | - | |
| Cla06g01419 | 198 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 21 | 193 | IPR035892 | - | |
| Cla06g01419 | 198 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 11 | 197 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01194 | Cla-Chr5:13172800 | Cla06g01419 | Cla-Chr6:27743172 | 1.10E-82 | dispersed | |
| Cla06g01419 | Cla-Chr6:27743172 | Cla07g00578 | Cla-Chr7:9925592 | 1.14E-61 | dispersed | |
| Cla04g01044 | Cla-Chr4:25616339 | Cla06g01419 | Cla-Chr6:27743172 | 2.50E-90 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01419 | - | - | csv:101220972 | 311.227 |