Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01422 | ATGTGGACGTTGGGTTACGATGACAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCTTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTGTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCATCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGAAGAGACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTACCATCGAATCCAGCAATGGAGACCGACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAATGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCCGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA | 978 | 44.99 | MWTLGYDDNGGEFCFSEAFNGGRKLRPLVPRPLPSFHANGANFSSQYYHLGNHLNEDNKRGLLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPSSIISSTLLSKEWAETQRKTKVVELEEEEEEETRRESVEREETWNYNNILNCQLINPTRKTQHLNSTIESSNGDRRHNVVDNNNDDEESKMMTLQLFPLRSTKFYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 27792731 | 27796724 | - | ClCG06G014350.2 | Cla06g01422 | 275614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01422 | 325 | ProSiteProfiles | 'Homeobox' domain profile. | 85 | 140 | IPR001356 | GO:0003677 | |
| Cla06g01422 | 325 | Coils | Coil | 198 | 218 | - | - | |
| Cla06g01422 | 325 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 52 | 325 | - | - | |
| Cla06g01422 | 325 | Gene3D | - | 79 | 147 | - | - | |
| Cla06g01422 | 325 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 52 | 325 | IPR044555 | GO:0003700|GO:0099402 | |
| Cla06g01422 | 325 | SMART | HOX_1 | 77 | 144 | IPR001356 | GO:0003677 | |
| Cla06g01422 | 325 | CDD | homeodomain | 81 | 141 | IPR001356 | GO:0003677 | |
| Cla06g01422 | 325 | MobiDBLite | consensus disorder prediction | 284 | 308 | - | - | |
| Cla06g01422 | 325 | SUPERFAMILY | Homeodomain-like | 79 | 144 | IPR009057 | - | |
| Cla06g01422 | 325 | Pfam | Homeodomain | 79 | 139 | IPR001356 | GO:0003677 | |
| Cla06g01422 | 325 | MobiDBLite | consensus disorder prediction | 284 | 299 | - | - | |
| Cla06g01422 | 325 | MobiDBLite | consensus disorder prediction | 243 | 263 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g01050 | Cla06g01422 | CCT | |
| Cla04g01050 | Cla06g01422 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01974 | Cla-Chr1:34366813 | Cla06g01422 | Cla-Chr6:27792731 | 4.62E-27 | dispersed | |
| Cla06g01422 | Cla-Chr6:27792731 | Cla11g01830 | Cla-Chr11:31948250 | 3.32E-13 | dispersed | |
| Cla08g01585 | Cla-Chr8:28538973 | Cla06g01422 | Cla-Chr6:27792731 | 8.70E-29 | transposed | |
| Cla10g00031 | Cla-Chr10:409762 | Cla06g01422 | Cla-Chr6:27792731 | 4.87E-15 | transposed | |
| Cla11g00606 | Cla-Chr11:6883719 | Cla06g01422 | Cla-Chr6:27792731 | 2.64E-28 | transposed | |
| Cla04g01050 | Cla-Chr4:25683936 | Cla06g01422 | Cla-Chr6:27792731 | 4.19E-54 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61307 | PF00046 | Homeodomain | 2.20E-19 | CL0123 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01422 | - | - | csv:105434593 | 432.95 |