Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01427 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGTACTTCTTCTTCTTCTTCCACTTCTACTTCTAATTTTGGTTCTAGTTCTGATTCTTCTGATCCTAATCTCAATTACCCTAATCACCATAAGTTTGACCATGTTGATAATGGTGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTACCCACAAACGCAAACCTCTAAGGAAACAACCCCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAAGACGACGATCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAACGGACAAATCACTTCAGACATCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGCAGCTATGGGGTTGTCGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAAGTAATTGGTATGTTTGCTTTCACTTATATCTCAAGTGCAAACCGTCTTGTCCTACCTTGGCCTTTATGTGCCTTTGCTGGTATTTACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAACCGCTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGACCTGATGACTGATGTGCTTGGCACACCTTCCGCTGAGTCCATTGCTAGGATTCGGAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCTAACGTGGATCGGGAACCATCAACACAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACAAGCTTCATGTACCCAAGTGGGGTTGATCGCTTCAAACGCCAGTTTGCACATCTGGAGGAACATTACGGCAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGTCTGTGCACCAAAAGATGAATCCGAACAACACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAAAGTCCCCCAAAGTCGCAAGGAGATGGTTCCGCAAACGCAAACGGTAATGAACAAAATGGACCAAACAAGCCAAATTACAGTGCCCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGATGTTAAACCAAGAAAAGACCTAGAGGAGGAACCGATTACCGAGATGAATGATGAGGCAATTGACGGATTGTCTCATAAGGGCCCTTTCAGGTTGTTACCCTCGTGTAGCATGAATACCTCGTTGGAAGAAACAACAAACAGGCATTGGATTTATACATCACAAATCCTTGTTTTGGCGTATACCTCTATTTCACAGGCTTGTAGCTCAATGATGAAAATGAATATTGTACCTTGA 2139 42.4 MGSGTLVDGVRRWFQRRTSSSSSTSTSNFGSSSDSSDPNLNYPNHHKFDHVDNGGVNGDQLLSSDLRAQSTITHKRKPLRKQPQLGGEGILEQLPEEEDDDLDYSALKLIKVPKRTNHFRHPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKVIGMFAFTYISSANRLVLPWPLCAFAGIYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRVCAPKDESEQHNDLEGRNVATSLQSPPKSQGDGSANANGNEQNGPNKPNYSARSLLKSASISASKCIDVKPRKDLEEEPITEMNDEAIDGLSHKGPFRLLPSCSMNTSLEETTNRHWIYTSQILVLAYTSISQACSSMMKMNIVP 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27853411 27859633 + ClCG06G014400.2 Cla06g01427 275619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01427 712 CDD STKc_TDY_MAPK 149 514 - -
Cla06g01427 712 Gene3D Transferase(Phosphotransferase) domain 1 355 492 - -
Cla06g01427 712 Pfam Protein kinase domain 150 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01427 712 Pfam Protein kinase domain 361 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01427 712 MobiDBLite consensus disorder prediction 582 619 - -
Cla06g01427 712 Gene3D Transferase(Phosphotransferase) domain 1 236 342 - -
Cla06g01427 712 MobiDBLite consensus disorder prediction 16 61 - -
Cla06g01427 712 MobiDBLite consensus disorder prediction 567 581 - -
Cla06g01427 712 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 355 600 - -
Cla06g01427 712 SUPERFAMILY Protein kinase-like (PK-like) 146 474 IPR011009 -
Cla06g01427 712 Gene3D Phosphorylase Kinase; domain 1 147 235 - -
Cla06g01427 712 ProSitePatterns MAP kinase signature. 185 288 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cla06g01427 712 MobiDBLite consensus disorder prediction 549 619 - -
Cla06g01427 712 ProSiteProfiles Protein kinase domain profile. 150 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01427 712 ProSitePatterns Protein kinases ATP-binding region signature. 156 180 IPR017441 GO:0005524
Cla06g01427 712 MobiDBLite consensus disorder prediction 16 42 - -
Cla06g01427 712 Gene3D Phosphorylase Kinase; domain 1 493 515 - -
Cla06g01427 712 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 116 332 - -
Cla06g01427 712 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 355 600 - -
Cla06g01427 712 SMART serkin_6 150 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01427 712 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 116 332 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01055 Cla06g01427 CCT
Cla04g01055 Cla06g01427 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01800 Cla-Chr2:33016138 Cla06g01427 Cla-Chr6:27853411 0 dispersed
Cla03g00935 Cla-Chr3:15460447 Cla06g01427 Cla-Chr6:27853411 0 dispersed
Cla06g00537 Cla-Chr6:6447769 Cla06g01427 Cla-Chr6:27853411 0 dispersed
Cla06g01427 Cla-Chr6:27853411 Cla07g00638 Cla-Chr7:12421762 0 dispersed
Cla04g01055 Cla-Chr4:25731887 Cla06g01427 Cla-Chr6:27853411 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80653 PF00069 Pkinase 5.70E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01427 - - jre:109013778 901.738