Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01427 | ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGTACTTCTTCTTCTTCTTCCACTTCTACTTCTAATTTTGGTTCTAGTTCTGATTCTTCTGATCCTAATCTCAATTACCCTAATCACCATAAGTTTGACCATGTTGATAATGGTGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTACCCACAAACGCAAACCTCTAAGGAAACAACCCCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAAGACGACGATCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAACGGACAAATCACTTCAGACATCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGCAGCTATGGGGTTGTCGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAAGTAATTGGTATGTTTGCTTTCACTTATATCTCAAGTGCAAACCGTCTTGTCCTACCTTGGCCTTTATGTGCCTTTGCTGGTATTTACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAACCGCTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGACCTGATGACTGATGTGCTTGGCACACCTTCCGCTGAGTCCATTGCTAGGATTCGGAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCTAACGTGGATCGGGAACCATCAACACAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACAAGCTTCATGTACCCAAGTGGGGTTGATCGCTTCAAACGCCAGTTTGCACATCTGGAGGAACATTACGGCAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGTCTGTGCACCAAAAGATGAATCCGAACAACACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAAAGTCCCCCAAAGTCGCAAGGAGATGGTTCCGCAAACGCAAACGGTAATGAACAAAATGGACCAAACAAGCCAAATTACAGTGCCCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGATGTTAAACCAAGAAAAGACCTAGAGGAGGAACCGATTACCGAGATGAATGATGAGGCAATTGACGGATTGTCTCATAAGGGCCCTTTCAGGTTGTTACCCTCGTGTAGCATGAATACCTCGTTGGAAGAAACAACAAACAGGCATTGGATTTATACATCACAAATCCTTGTTTTGGCGTATACCTCTATTTCACAGGCTTGTAGCTCAATGATGAAAATGAATATTGTACCTTGA | 2139 | 42.4 | MGSGTLVDGVRRWFQRRTSSSSSTSTSNFGSSSDSSDPNLNYPNHHKFDHVDNGGVNGDQLLSSDLRAQSTITHKRKPLRKQPQLGGEGILEQLPEEEDDDLDYSALKLIKVPKRTNHFRHPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKVIGMFAFTYISSANRLVLPWPLCAFAGIYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRVCAPKDESEQHNDLEGRNVATSLQSPPKSQGDGSANANGNEQNGPNKPNYSARSLLKSASISASKCIDVKPRKDLEEEPITEMNDEAIDGLSHKGPFRLLPSCSMNTSLEETTNRHWIYTSQILVLAYTSISQACSSMMKMNIVP | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27853411 | 27859633 | + | ClCG06G014400.2 | Cla06g01427 | 275619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01427 | 712 | CDD | STKc_TDY_MAPK | 149 | 514 | - | - | |
Cla06g01427 | 712 | Gene3D | Transferase(Phosphotransferase) domain 1 | 355 | 492 | - | - | |
Cla06g01427 | 712 | Pfam | Protein kinase domain | 150 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01427 | 712 | Pfam | Protein kinase domain | 361 | 469 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01427 | 712 | MobiDBLite | consensus disorder prediction | 582 | 619 | - | - | |
Cla06g01427 | 712 | Gene3D | Transferase(Phosphotransferase) domain 1 | 236 | 342 | - | - | |
Cla06g01427 | 712 | MobiDBLite | consensus disorder prediction | 16 | 61 | - | - | |
Cla06g01427 | 712 | MobiDBLite | consensus disorder prediction | 567 | 581 | - | - | |
Cla06g01427 | 712 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 355 | 600 | - | - | |
Cla06g01427 | 712 | SUPERFAMILY | Protein kinase-like (PK-like) | 146 | 474 | IPR011009 | - | |
Cla06g01427 | 712 | Gene3D | Phosphorylase Kinase; domain 1 | 147 | 235 | - | - | |
Cla06g01427 | 712 | ProSitePatterns | MAP kinase signature. | 185 | 288 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cla06g01427 | 712 | MobiDBLite | consensus disorder prediction | 549 | 619 | - | - | |
Cla06g01427 | 712 | ProSiteProfiles | Protein kinase domain profile. | 150 | 469 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01427 | 712 | ProSitePatterns | Protein kinases ATP-binding region signature. | 156 | 180 | IPR017441 | GO:0005524 | |
Cla06g01427 | 712 | MobiDBLite | consensus disorder prediction | 16 | 42 | - | - | |
Cla06g01427 | 712 | Gene3D | Phosphorylase Kinase; domain 1 | 493 | 515 | - | - | |
Cla06g01427 | 712 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 116 | 332 | - | - | |
Cla06g01427 | 712 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 355 | 600 | - | - | |
Cla06g01427 | 712 | SMART | serkin_6 | 150 | 469 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g01427 | 712 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 116 | 332 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla04g01055 | Cla06g01427 | CCT | |
Cla04g01055 | Cla06g01427 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01800 | Cla-Chr2:33016138 | Cla06g01427 | Cla-Chr6:27853411 | 0 | dispersed | |
Cla03g00935 | Cla-Chr3:15460447 | Cla06g01427 | Cla-Chr6:27853411 | 0 | dispersed | |
Cla06g00537 | Cla-Chr6:6447769 | Cla06g01427 | Cla-Chr6:27853411 | 0 | dispersed | |
Cla06g01427 | Cla-Chr6:27853411 | Cla07g00638 | Cla-Chr7:12421762 | 0 | dispersed | |
Cla04g01055 | Cla-Chr4:25731887 | Cla06g01427 | Cla-Chr6:27853411 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80653 | PF00069 | Pkinase | 5.70E-47 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01427 | - | - | jre:109013778 | 901.738 |