Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01429 ATGCAAATGGCTGGTGGTAATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGTCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 840 52.38 MQMAGGNQDMAVHSLASKLSVVSEHEPEQCGNNNNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27866233 27867249 + ClCG06G014420.1 Cla06g01429 275621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01429 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Cla06g01429 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Cla06g01429 279 MobiDBLite consensus disorder prediction 26 47 - -
Cla06g01429 279 CDD DUF296 99 181 IPR005175 -
Cla06g01429 279 Gene3D - 98 234 - -
Cla06g01429 279 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cla06g01429 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 278 IPR014476 GO:0003680
Cla06g01429 279 MobiDBLite consensus disorder prediction 20 88 - -
Cla06g01429 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 39 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01429 Cla-Chr6:27866233 Cla07g00325 Cla-Chr7:3777463 1.46E-66 dispersed
Cla06g01429 Cla-Chr6:27866233 Cla05g00274 Cla-Chr5:2486749 4.37E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01429 - - csv:101219306 503.442