Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01431 ATGCGACGTGTCAGCAATCAAACACCGCCACGTATTTTTAAAATAAAATTAAAAGAAAAAAAAACGCGGCGACTCTGTCGCCTTTACCGGCAATTGTGTAAGAAGCCCCTCTTTCATCCCCGTTATCGTCGTCTTCGTGCGCTTCACGGTCACAGTTTCAAATGCAAACACCTTCAAATTGACTCTCTTTTTCGCCATTTTCATTTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCATCTTTCCGACCATGGCGACGCCGGAGCTTTCTGAAACCTACGCCTGTGTGCCATCCACTGAGCGAGGCCGAGGAATTTTAATCTCCGGCCACCCCAAAACCAACTCCGTTCTCTACACCAATGGCCGATCCGTCATGATCCTCAATCTCGACAACCCGCTTGAGGTCTCTGTCTATGCCGAGCACGGTTATCCGGCTACGGTTGCCAGGTACTCTCCGAATGGCGAGTGGATCGCGTCTGCTGATGTGTCTGGGACTGTGAGGATTTGGGGCACTCATAGTGGCTTCGTGCTCAAGAAGGAGTTTAAGGTTTTGTCCGGTCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGCTTGTGGGGAGGGGAAGGGAAAATCGTTCGTGCGTGCTTTTATGTGGGACTCAGGTACCAATGTTGGTGAGTTTGATGGTCATTCTAGGCGGGTTCTAAGCTGTGCATTTAAACCAACAAGACCCTTCCGCATTGCCACCTGCGGAGAGGATTTCCTAGTGAATTTTTATGAAGGACCGCCATTTAGATTTAAGCTGTCACTCAGGGACCATTCAAATTTTGTCAACTGTCTAAGGTTCTCTCCAGATGGCAGCAAGTTCATTACTGTAAGCTCCGACAAGAAGGGCATAATATATGATGCGAAGACTGGGGATAAGATGGGAGAACTCTCTTCCGATGATGGGCATAAAGGCAGTATTTATGCTGTCAGCTGGAGTTCGGATGGAAAATGGGTGCTGACTGTCTCTGCCGACAAGACAGCAAAAGTCTGGGAGATATCTGATGATGGTAATGGGAAGTTAGAGAAAACCTTGACTTCTCCTGGCACGGGTGGTGTTGATGATATGCTGGTTGGGTGTTTATGGCAGAATCAACATCTTGTTACAATTTCTCTTGGTGGAACTATTAGTTTGTTTTCAGCTAGTGATCTTGATAAATCCCCCGTCATCTTATCTGGACATATGAAGAATGTCACTTCATTAGTTGTTCTGAAAAGTGACCCTAAAGTTATATTATCCACCAGCTACGATGGGCTGATTATTAAATGGATTCAAGGTATTGGATACAGTGGCAAGTTGCAAAGAAGAGAAAATTCTCAAATCAAATGTTTTGCAGCTCTTGAAGATGAACTTGTTACGTCTGGTTTTGACAATAAGGTCTGGAGAGTTTCTATCAAGGATGGACAGTGTGGGGAGGCAGAGGCTATTGATGTTGGAAGTCAACCAAAGGACTTGACCCTCGCTTCTCTTTCTCCGGAACTTGCTTTGGTTGCAGTTGATTCTGGAGTTGTCTTACTGCGTGGTTCAAACGTAGTGTCAACCATCAACCTTGGCTTTACTGTGACAGCATCTGTACTTGCGCCTGATGGAAGTGAGGCTATAATAGGTGGTCAAGATGGTAAATTACATATTTATTCCATTGATGGCGACTTGCTCACTGAAGAAGCAACCCTTGAGAAACACAGAGGAGCTATTAGTGTGATACGCTACTCCCCAGATCTTTCGATGTTTGCATCAGGAGATCTCAATCGAGAAGCTATCGTCTGGGATCGTGCATCCCGAGAGGTGAAACTTAAGAATATGTTGTATCACACTGCTCGGATAAATTGTCTTGCTTGGTCTCCTGATAACACCAAGATTGCAACTGGTTCATTAGATACATGTGTTATCATATATGAAATTGACAAGCCAGCATCCAGTCGTCTAACAATAAAGGGAGCTCATTTGGGTGGGGTGTACGGACTCGCCTTCACGGATGACTATAGTGTGGTGAGCTCCGGTGAGGATGCTTGCGTTCGTGTTTGGAAGTTGATTCCTCAGTGA 2100 45.33 MRRVSNQTPPRIFKIKLKEKKTRRLCRLYRQLCKKPLFHPRYRRLRALHGHSFKCKHLQIDSLFRHFHFFLFFFFFFFFFFFLFIFPTMATPELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGYPATVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSIYAVSWSSDGKWVLTVSADKTAKVWEISDDGNGKLEKTLTSPGTGGVDDMLVGCLWQNQHLVTISLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGLIIKWIQGIGYSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLASLSPELALVAVDSGVVLLRGSNVVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSIDGDLLTEEATLEKHRGAISVIRYSPDLSMFASGDLNREAIVWDRASREVKLKNMLYHTARINCLAWSPDNTKIATGSLDTCVIIYEIDKPASSRLTIKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKLIPQ 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27880842 27887529 + ClCG06G014440.2 Cla06g01431 275623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01431 699 PANTHER ACTIN-INTERACTING PROTEIN 1-1 93 699 - -
Cla06g01431 699 Gene3D - 97 695 IPR015943 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 661 IPR001680 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 353 IPR001680 GO:0005515
Cla06g01431 699 SUPERFAMILY WD40 repeat-like 383 696 IPR036322 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 315 IPR001680 GO:0005515
Cla06g01431 699 SUPERFAMILY WD40 repeat-like 115 442 IPR036322 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 609 IPR001680 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 699 - -
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 699 IPR001680 GO:0005515
Cla06g01431 699 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 93 699 - -
Cla06g01431 699 SMART WD40_4 357 399 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 527 565 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 403 443 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 309 351 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 224 264 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 136 175 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 179 223 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 570 609 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 656 695 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 614 652 IPR001680 GO:0005515
Cla06g01431 699 SMART WD40_4 267 306 IPR001680 GO:0005515
Cla06g01431 699 CDD WD40 139 442 - -
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 353 - -
Cla06g01431 699 Pfam WD domain, G-beta repeat 153 174 IPR001680 GO:0005515
Cla06g01431 699 Pfam WD domain, G-beta repeat 320 350 IPR001680 GO:0005515
Cla06g01431 699 Pfam WD domain, G-beta repeat 665 695 IPR001680 GO:0005515
Cla06g01431 699 Pfam WD domain, G-beta repeat 273 301 IPR001680 GO:0005515
Cla06g01431 699 Pfam WD domain, G-beta repeat 623 651 IPR001680 GO:0005515
Cla06g01431 699 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Cla06g01431 699 Gene3D - 101 427 IPR015943 GO:0005515
Cla06g01431 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01431 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1204.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01431 Cla-Chr6:27880842 Cla07g00137 Cla-Chr7:1559177 1.06E-12 dispersed
Cla06g01431 Cla-Chr6:27880842 Cla09g00656 Cla-Chr9:6239084 7.86E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01431 Cla_Chr06 FPKM 137.126907 142.485794 12.408614 13.249521 41.695694 37.830639 34.882797 6.80101 6.906877 6.040743
Cla06g01431 Cla_Chr00 FPKM 208.004593 215.840591 4.823046 5.345877 15.36722 14.049342 14.290863 3.153406 2.994674 2.572452