Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01434 ATGATGGGGAAGGGTCAGCCAAACACTTTGACATTAGCAGAGAAACTTGATTTATGGGAAAACCTCAAAATACTAAGCTTCACAAAGATGGTGATATCACTCTGGGCAATAACTGTGCTAAGCTTATACATTAGAGTTCAAGTCAACATCTTAGGAAGACATATGTACATCGATACAGCCCGTGGTCTTGGTAGTTCCCACTTGCTTGAGGAGGCTGATCTCATCGATAGAGATGACCAACAGAAATTTCTAGCAATCTCCGATTTTCTCTGTAATTATGGCCTGAATGCCTTGATTCCTAAATTGCAGGTAGCAGTAGGAGAAGTTCTCAAGAGAAAACAATTGCGAGATGTCTTTAATACAACTGTACTTCGCGAAACTACTATACAAATAATTAAAATCTTCATGAGCACCGGAAGTCCCCATCATTGGTTGGACTACTTGATGCCCGGCGACAATCAATCTAGTATTGCAGACACGCCCTCCACCGATGATGATACAGCTGCCCCAAATTTCAATAAGTTTGACCAACTTATGATGGAAACTAGAGCAGTACTGCTAAGCAGCAGAACATCAGGAATACCACTAGCCAGACTTGTGCCTAGAGTTGCTCAGATGGGGCTATTGCTCCTTGAAGATCCAATAAAAAGTAGATTCATCCAAATGATAAGAGAAAGGAAGGAAGACGAAGACAAGTCAGACGAATTCGCTTCGAGTTCATCCAATAACTCTCTCAATCACCCAAAACTCTTACTCAAAATCCTTTCTAATGCTAACGCGCAATTTCCAATTTCATTCAAATCTTCAAGTCGGCCTTCAGTTTACAGGTTACCGAGATTGAAAACCTGCGCAGCTTTAGACGAAAAGGACCCCAATGGAGCAACCCCAGTTCTGGTAGAGCAAGAGAGTTCCAGCAATATTGTGGATGAGGAAGTGGAAAAGAGTGTCAAAGTGCTAAAAAATGCGGCAAAGACAAGAAAGGTAGCAGCAGAAGAAGTTTTGTCTGCTCTTTCTGTACTTGAGAAGGCCAAACTTGACCCTTCAAAGTTCTTTAATACACTTGGTGGAACAAGCTCTCCTGGTAGAACCTGGATGCTTATTTTTACTGCCGAGAAAAAATTGGCAAAAGGGCGGTACTTTCCTCTCACAGCCATCCAGAGGTTTGATGCTGCTGGAAAAAGAATAGAGAATGGAGTGTTTCTGGGACCTATTGGAAGCTTAACATTTGAAGGTAGACTTTCGTGGAAGACGAGAATATTAGCATTCATTTTCGAGCGAATTCGAATAAAAGTTGGACCTTTAAACCCTTTAGAGATTAGTCTTGGTCAAAAAGAAGAAAGGGAGCCGAGCAACAAGGATCCTTTCTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGTGGTAGAAGTGGGGGAACTGCATTCTGGTGCCGGTGTCGCCGTGTAACTGCCACTTCTCTTTGGATATTTCTTGGAGATACAGTGTTTGAATGTAGCTTGGACAGCAATCAAAATTTAGTGTTGGAGGCTGGTGCCAATGATCGTCTATCATTTTGGGGGTTCAATCCCAAATTTTGTACTGCAGCCTCCACAGCCTTCTCCTTCTCTTCTCCTTCAGCCTGGCAAGCTTCCCACGCACCGAACACGCCCTGCGTTCAGAAAAGTATGGACTTGGAAGCGGGAAAGTGCATGGAGCAAAAGGACTATGGTTTGGTTACCTTCTCATCTAAAAACTTAGCCCAGAAGCGAGCATTGGCTCTGTCATATGGATCTTCAGGCAATATTGGGTTCTCCTTCCACGTCTCGTCGATGTATTCGATAATGAGAAGCGACTCGGAGATGGCTTTGTCATTGTGCAAAAGCACCGGTATTTTCTTGAGCACAGGGTTGGACTTGAGAAGCAACTCACTTTTGTTTCTCAAGTCTTCAGGTATGTACTCGTACTCAATTCCTTTGAGCTTCAAGGCCCATTCAACCCTTATGCAGAATAGGCTTGAAGCTGACCCAATTATCTTTGCCTCTGCCATTGTTGGAAATGGCTTCTTTGACTAG 2058 43.15 MMGKGQPNTLTLAEKLDLWENLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDRDDQQKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTIQIIKIFMSTGSPHHWLDYLMPGDNQSSIADTPSTDDDTAAPNFNKFDQLMMETRAVLLSSRTSGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRERKEDEDKSDEFASSSSNNSLNHPKLLLKILSNANAQFPISFKSSSRPSVYRLPRLKTCAALDEKDPNGATPVLVEQESSSNIVDEEVEKSVKVLKNAAKTRKVAAEEVLSALSVLEKAKLDPSKFFNTLGGTSSPGRTWMLIFTAEKKLAKGRYFPLTAIQRFDAAGKRIENGVFLGPIGSLTFEGRLSWKTRILAFIFERIRIKVGPLNPLEISLGQKEEREPSNKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRRVTATSLWIFLGDTVFECSLDSNQNLVLEAGANDRLSFWGFNPKFCTAASTAFSFSSPSAWQASHAPNTPCVQKSMDLEAGKCMEQKDYGLVTFSSKNLAQKRALALSYGSSGNIGFSFHVSSMYSIMRSDSEMALSLCKSTGIFLSTGLDLRSNSLLFLKSSGMYSYSIPLSFKAHSTLMQNRLEADPIIFASAIVGNGFFD 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27912394 27928511 + ClCG06G014470.2 Cla06g01434 275626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01434 685 PANTHER OS01G0363500 PROTEIN 237 483 - -
Cla06g01434 685 Pfam Peroxin-3 10 221 IPR006966 GO:0005779|GO:0007031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01434 - - - cmo:103494159 427.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g243 Blo04g00841 . . . . Bpe13g00369 . . . . . Cma11g00301 . Car11g00275 . . . . . . . . . . Cla06g01434 Cam06g1589 Cec06g1649 Cco06g1641 Clacu06g1550 Cmu06g1505 Cre06g2314 . . . . . . . . . . . . . Bpe15g00521 . . . Cmo10g00342 Cmo11g00304 . . . . . . . . . . . . . . . . . . . . Lsi06g01301 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013721 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01434 Cla_Chr06 FPKM 5.313772 5.243371 1.710643 2.023338 4.325296 3.62417 4.397171 1.355711 1.695945 1.555698
Cla06g01434 Cla_Chr00 FPKM 3.008884 3.003471 2.665311 2.748367 3.451948 2.869987 3.052975 2.809969 2.237517 2.187923