Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01435 ATGCAAAGATCACCAACAATGGCAGAGGCAAAGATAATTGGGTCAGCTTCAAGCCTATTCTGCATAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTACGAGTACATACCTGAAGACTTGAGAAACAAAAGTGAGTTGCTTCTCAAGTCCAACCCTGTGCTCAAGAAAATACCGGTGCTTTTGCACAATGACAAAGCCATCTCCGAGTCGCTTCTCATTATCGAATACATCGACGAGACGTGGAAGGAGAACCCAATATTGCCTGAAGATCCATATGACAGAGCCAATGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCGTGTTCGGTGCGTGGGAAGCTTGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAGTACAAAATTTGGGACTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGAGGAGAGCAAATTGGTTATCTAGATTTAGCTGCAGGTTGGATCTGCCACTGGCTCAATGTTCTGGATGAAGTGGGAGAAATGAATGTGTTTGACAAAGAGAGGGTCCCATCCCTTCATGAATGGGCTCAAAACTTCATCCAGATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAAATCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCCTTAGCTGCAAAAAATAAAATACAAACTCCTTTGTCCCCTTCTGAACTGACTGCATCTAAATTATCCCTCACTCCTCAAGATGAAATCACCGCAGAACTCAGAAGAGCAGATTATTTGTTGGTTCGTCGGACAGCTGAGCATTTCTAG 819 44.93 MQRSPTMAEAKIIGSASSLFCIRVEWALKLKGIEYEYIPEDLRNKSELLLKSNPVLKKIPVLLHNDKAISESLLIIEYIDETWKENPILPEDPYDRANARFWAKFLDEKGVFGAWEACQAEGEEKEKAVEAAVQNLGLLDKEIQGKKFFGGEQIGYLDLAAGWICHWLNVLDEVGEMNVFDKERVPSLHEWAQNFIQIPVIKESLPPRENLVNYFKGSLSYVRSLAAKNKIQTPLSPSELTASKLSLTPQDEITAELRRADYLLVRRTAEHF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27926213 27927934 - ClCG06G014490.1 Cla06g01435 275627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01435 272 Pfam Glutathione S-transferase, C-terminal domain 120 199 IPR004046 -
Cla06g01435 272 SFLD Glutathione Transferase (cytosolic) 7 222 IPR040079 -
Cla06g01435 272 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Cla06g01435 272 CDD GST_N_Tau 11 83 - -
Cla06g01435 272 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 87 IPR004045 -
Cla06g01435 272 Gene3D - 89 224 - -
Cla06g01435 272 Gene3D Glutaredoxin 5 88 - -
Cla06g01435 272 SUPERFAMILY GST C-terminal domain-like 81 217 IPR036282 -
Cla06g01435 272 CDD GST_C_Tau 93 217 IPR045074 GO:0004364|GO:0006749
Cla06g01435 272 PANTHER GLUTATHIONE S-TRANSFERASE 7 227 - -
Cla06g01435 272 SUPERFAMILY Thioredoxin-like 12 108 IPR036249 -
Cla06g01435 272 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 227 IPR045073 -
Cla06g01435 272 SFLD Main.3: Omega- and Tau-like 7 222 IPR045073 -
Cla06g01435 272 Pfam Glutathione S-transferase, N-terminal domain 20 81 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01435 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101217418 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01351 Cla-Chr2:27759167 Cla06g01435 Cla-Chr6:27926213 8.61E-08 dispersed
Cla05g00265 Cla-Chr5:2393890 Cla06g01435 Cla-Chr6:27926213 3.72E-69 dispersed
Cla05g00387 Cla-Chr5:3515056 Cla06g01435 Cla-Chr6:27926213 9.03E-52 dispersed
Cla05g00390 Cla-Chr5:3521607 Cla06g01435 Cla-Chr6:27926213 1.42E-06 dispersed
Cla06g01435 Cla-Chr6:27926213 Cla07g01007 Cla-Chr7:26425770 4.81E-45 dispersed
Cla06g01435 Cla-Chr6:27926213 Cla05g02445 Cla-Chr5:35895016 2.02E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01435 Cla_Chr06 FPKM 8.688597 10.625731 3.725053 3.913827 9.8307 8.923375 7.621056 3.095521 2.965949 2.588338