Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01436 ATGGCTGAGTTCGATCCATCAAAGAAAGTGGCCGATAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGCTAGGAAGGCGGAATATGGCGATGGCTTCTGGAGCTATTTGGTGCCAGACGGTTGCAATTAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGCGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACTTTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTAGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGTTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCGGAACTACTACTTCGTCGTCCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACTCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCTCGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCCAGAAAGTCGAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCACATCGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGGTAGCTGCTGGAAATTCAAGCAAGAATGAAGCAGTGCCTATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAGTAA 1290 41.71 MAEFDPSKKVADRYLKREVLGEGTYGVVYKAIDTQLGRRNMAMASGAIWCQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFSSAPLPTDPSKLPRPTSKREPTNSRVLDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAHRADRLDDHVNEVREVAAGNSSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27929686 27935272 + ClCG06G014500.2 Cla06g01436 275628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01436 429 MobiDBLite consensus disorder prediction 323 345 - -
Cla06g01436 429 MobiDBLite consensus disorder prediction 307 354 - -
Cla06g01436 429 MobiDBLite consensus disorder prediction 384 418 - -
Cla06g01436 429 SUPERFAMILY Protein kinase-like (PK-like) 9 314 IPR011009 -
Cla06g01436 429 CDD STKc_CDK7 13 320 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cla06g01436 429 PANTHER CELL DIVISION PROTEIN KINASE 9 373 - -
Cla06g01436 429 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01436 429 Gene3D Transferase(Phosphotransferase) domain 1 108 323 - -
Cla06g01436 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cla06g01436 429 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 373 - -
Cla06g01436 429 Gene3D Phosphorylase Kinase; domain 1 2 107 - -
Cla06g01436 429 ProSiteProfiles Protein kinase domain profile. 14 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01436 429 SMART serkin_6 14 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01436 Cla-Chr6:27929686 Cla11g01359 Cla-Chr11:27088155 3.35E-77 dispersed
Cla11g00214 Cla-Chr11:2487351 Cla06g01436 Cla-Chr6:27929686 1.39E-17 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80654 PF00069 Pkinase 5.00E-66 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01436 K02202 - csv:101217645 808.905