Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01437 ATGTTGTTTCAGCATTGGTTGCTCCCAATTGCGGTCATAGTGACAGTATTCCCAAACTTGGAAGGCATTGAAATAAACCAGCAAAGCATAAAAACGCAAAGTTATGTATCCCCATTATTCACTTTAACTCCTGGTTCAGTAGTTGAAAAATTCTACTACGATATCAACTTTCCCAAAGGCCATATTGCAATAAAGAGCTTCGACGCCGAAGTTGTGGACCAACAATCCAATCCCGTCTCACTTTTCGACGCATATCTCCATCACTGGACACTCGTGAGATATTATCAACACAACAAAACCGCAACACATCCTGATTTCGCAGACTCCATTATTATTGCCGGCAACAATGGAGTTTGCCAACCACATACATTATCCTATTTCTATGGTATGGGAACTGAATCGAGAAACACATCAAATTTTCTTCCAAACCCATACGGAATTGAAGTTGGAAATGAAGAGGAAGTTCCTTTAGGATATCAAGAGAAATGGATGCTTAATGTACATGTCATTGATACTAGAGGAGTGGAGGATAGAGTTGGATGCCTTGAGTGTAAATGCCATTTGTATGATAATGATAACAAGGATGACTTAGGAGATTATAAAGGAGGTTTTAGATGTTGTTACGATCAAACTCAGTGTAAAGTGAAGGAAGGTTATGAAGGAGAGAAACGGAATTTGTATGTAAAATACACAGTGAAATGGGTTGATTGGGATGATGATTTTGTGATTCCTGTCAAAGTTTATGTCTTTGATGCAACTGATACTTGGCAGCCATTCGTTGAGTATGATGTAGAATCTTGCTCCCTCACAAACAAGTTGGATGGTGAGTGTGGTGCTATCAAAAGATCTAAGGTGATGTTCGAAGACAATGGGTTTCTTGTGTATGGAGTGGCTCATCAGCACATTGGTGGGATTGGTGCAACCCTTTACGGAGAGGATGGGAGAGTTTTATGTTCTTCATCACCAATTTATGGAAAAGGAGATGAAATAGGAAATGAAGATGGGTATGTTGTTGGAATGTCAACTTGTTATCCAAAATTGGGTGATGTGAAGATTAATAAAGGAGAATTGGGGAGTCTTGTATCCAAATATGATCCAACACAAAACCACACAGAGAATCTGATGGAGGAGGAAGATCAGAACTCGTCATTGAACTCACCCCTTATCCACACATCTGAAGATGAAGTGAATTCGAAAGATGAGAGACAGATAAATGATAAGAATATCAGAAGGAAACTGATAGCCGAGGAAGTAAAGAAGCAGCTATGGCTAGCAGGGCCTCTAATATCGGTCAGTCTTCTCCAATACTGTTTGCAGATGATTTCCATCATGTTCGTGGGTCATCTCGGCGAATTGCCTCTCTCCGGTGCTTCCATGGCTGCTTCTTTTACATCGGTGACTGGTTTCACCGTCTTGATGGGGCTGGCTAGTGCTCTGGATACGTTTTGTGGCCAATCTTATGGAGCAAAGCAGTACCATATGTTGGGTATCCATATGCAAAGAGCAATGATTGTCCTTTTACTTGTGAGCATTCCTCTTTCAGTCATCTGGGCTAACACAGGAGAAATCCTGAAATTACTTGGCCAAGATGCTCAAATTTCAGCAGAAGCTGGGAAATATGCTAAATGCTTGATACCATGCCTTTTTGCACATGGTCTTGTTCAATGCCTGAACAGATTTTTACAGACCCAAAACGTTGTTTTCCCAATGATGATGAGTTCTGGAATAGCAGCTTTGCTTCACATCCCCCTCTGTTGGGTTATGGTATTCAAAGTTGGGCTTGGAACTCGCGGAGCTGCTGTGGCAAACTCCATTTCTTATTGGATCAATGCATTTATATTGATACTTTATGTTAAGTTTTCTTCTTCACGTTCAAAGTCTTGGACTGGCTTTTCAGGGCTGGCTTTTCACAACATCCCATATTTTCTTAAACTTGCAATTCCTTCAACTGTCATGGTTTGCCTGGAATTGTGGTCATTTGAGATGGTGGTTCTTCTGTCTGGACTTCTCCCAAATCCAAAATTAGAGACATCAGTGCTTTCTATTAGCCTTAATACAGATTTAACTGTTTGGATGATCCCAATGGGTCTGAGTGCTGCTGCTAGCACTCGAGTTTCAAATGAACTAGGAGCTCGTCGTCCTGCAGCAGCAAAACTAGCAGGGTGTGTAGTTATGACAATAGCTGTTATTGAGGGGCTACTGCTTGGGACTATCTTGATTCTTATAAGAAATGTGTGGGGTTATGCTTATAGCAACGAACAAGAAGTGGTTAAATATGTAGCGGACATAGTTCCCCTAATTGCAGTGTCCAGTTTTCTTGATGGACTCCAATGTGTTCTTTCAGGCATTGTTAGAGGATGTGGTTGGCAGAAAATTGGTGCATATGTCAATCTTGGATCATATTATCTTGTGGGAATCCCATCTGCAGTCTTGCTTGCTTTTGTCTTGCACGTCGGCGGAAAGGGGTTGTGGTTAGGCATCATCAGTGCACTTGCTGTCCAAACACTTTCTCTTGCTATCATTACCATCCGCACTAACTGGGACCAAGAAGCAAAGATGGCTACAGAACGAGTGTATGATGCAGTAATTCCACCTTTGAATGGTTTTAATGAAGCAAGAGGAGACAAGATGGACATTCAGGGAGTAGAAGTTTTGAAAGAAGTGAAAAGACAGATACTGTTGGCCGGGCCTTTATTTTCTGTCGGTTTGTTACAATACTGTTTACAGATAATTTCTTTGATGTTTGTGGGTCATCTTGGTGAATTGACTCTGGCAGCAGCTTCAATGGCAACTTCTTTTGTTTCAGTCACAGGTTTTAGCTTGCTGATGGGAATGGCTAGTGCATTGGATACCTTATGCGGGCAGTTGTTCGGTGCAAAGCAATATCATATGCTGGGAATACACACTCAATGTGCGATGTCAGTTCTCTTAGTTGTTAGCATATTTCTTGCCATTATTACAGCAAACACAAAACTGGTTCTAATTGCATTGCACCAAGATCAAGAGATATCCGAAGGAGCTGGATTATATGCCCGTTACATGATTCCAAGTGTGGTTGCATATGGTCAGCTTCAGTGTCTGGTGAAATTCTTACAAACTCAAAACATTGTCTTTCCCATGGTACTAAGTTCTGGAGTTGCAGCTTTAATCCACATCTTATTATGCTGGATTTTTGTTTTCAAATTTGAACTGCAAATTAGAGGAGCTGCTCTGGCAAATTCAATCTCTTATTGGATTAATGTATTTCTGATAGCACTCTATGTTAAGACCTCTTCTTGTTGCTCAGAAACATGGACAGGTTTTACAGTAGATGCTCTGCAGAATGTGCTTGCTTTCCTTAGGATTTCAATTCCTTCAGCTATTATGCTGTGCCTTAATATATTTGGATTATTCTGGATGATTTCCTTTGGACTTAGTGCGGCTGTAAGCATCCGAGTATCAAATGAGTTGGGGGCTGGACATCCACAAGCAGCACGTACTGCGGCATATGTTGCGTTAATAATGGTGGTTGCAGAAGGTGTTCTGGTAGGATTTCTCATGATTCTGCTTCGCGACTTCTGGGGTCGAGTTTATAGTGAAGAAGAAGAAGTTATCAGATACCTTGCAACTATGATGCCAACTGTAGCAATTTCTAGCTTCTTAGATGGTGTCCAGAGCGTTCTTTCAGGAGTTGCAAGAGGATGTGGTTGGCAGAAAATGGGTGCATATATCAATTTGGCTTCTTTTTACCTAGTGGGAATTCCTTGTTCCATATCTTTAGCTTTTGTCTTAAACATGAAAGGGAAGGGACTCTGGTTGGGTGTTGTATCTGCTTTTCTAGTGCAAGTGGTGCTTTTTCTTGGAATAACAATTCGCACAAACTGGGATAAACAGGTGAACCTTGACCACTGTTCATTGGCTGAAGAGGCTACAAACAGAGGCCAGGATTTCAGTGTCCCT 3939 41.28 MLFQHWLLPIAVIVTVFPNLEGIEINQQSIKTQSYVSPLFTLTPGSVVEKFYYDINFPKGHIAIKSFDAEVVDQQSNPVSLFDAYLHHWTLVRYYQHNKTATHPDFADSIIIAGNNGVCQPHTLSYFYGMGTESRNTSNFLPNPYGIEVGNEEEVPLGYQEKWMLNVHVIDTRGVEDRVGCLECKCHLYDNDNKDDLGDYKGGFRCCYDQTQCKVKEGYEGEKRNLYVKYTVKWVDWDDDFVIPVKVYVFDATDTWQPFVEYDVESCSLTNKLDGECGAIKRSKVMFEDNGFLVYGVAHQHIGGIGATLYGEDGRVLCSSSPIYGKGDEIGNEDGYVVGMSTCYPKLGDVKINKGELGSLVSKYDPTQNHTENLMEEEDQNSSLNSPLIHTSEDEVNSKDERQINDKNIRRKLIAEEVKKQLWLAGPLISVSLLQYCLQMISIMFVGHLGELPLSGASMAASFTSVTGFTVLMGLASALDTFCGQSYGAKQYHMLGIHMQRAMIVLLLVSIPLSVIWANTGEILKLLGQDAQISAEAGKYAKCLIPCLFAHGLVQCLNRFLQTQNVVFPMMMSSGIAALLHIPLCWVMVFKVGLGTRGAAVANSISYWINAFILILYVKFSSSRSKSWTGFSGLAFHNIPYFLKLAIPSTVMVCLELWSFEMVVLLSGLLPNPKLETSVLSISLNTDLTVWMIPMGLSAAASTRVSNELGARRPAAAKLAGCVVMTIAVIEGLLLGTILILIRNVWGYAYSNEQEVVKYVADIVPLIAVSSFLDGLQCVLSGIVRGCGWQKIGAYVNLGSYYLVGIPSAVLLAFVLHVGGKGLWLGIISALAVQTLSLAIITIRTNWDQEAKMATERVYDAVIPPLNGFNEARGDKMDIQGVEVLKEVKRQILLAGPLFSVGLLQYCLQIISLMFVGHLGELTLAAASMATSFVSVTGFSLLMGMASALDTLCGQLFGAKQYHMLGIHTQCAMSVLLVVSIFLAIITANTKLVLIALHQDQEISEGAGLYARYMIPSVVAYGQLQCLVKFLQTQNIVFPMVLSSGVAALIHILLCWIFVFKFELQIRGAALANSISYWINVFLIALYVKTSSCCSETWTGFTVDALQNVLAFLRISIPSAIMLCLNIFGLFWMISFGLSAAVSIRVSNELGAGHPQAARTAAYVALIMVVAEGVLVGFLMILLRDFWGRVYSEEEEVIRYLATMMPTVAISSFLDGVQSVLSGVARGCGWQKMGAYINLASFYLVGIPCSISLAFVLNMKGKGLWLGVVSAFLVQVVLFLGITIRTNWDKQVNLDHCSLAEEATNRGQDFSVP 1313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27936273 27949922 - ClCG06G014510.1 Cla06g01437 275629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01437 1313 PANTHER PROTEIN DETOXIFICATION 396 857 - -
Cla06g01437 1313 Pfam MatE 427 587 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 Pfam MatE 648 810 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 Pfam MatE 897 1057 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 Pfam MatE 1119 1249 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 PANTHER PROTEIN DETOXIFICATION 880 1128 - -
Cla06g01437 1313 PANTHER MULTIDRUG RESISTANCE PROTEIN 396 857 - -
Cla06g01437 1313 PANTHER MULTIDRUG RESISTANCE PROTEIN 1130 1298 - -
Cla06g01437 1313 TIGRFAM matE: MATE efflux family protein 897 1127 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 TIGRFAM matE: MATE efflux family protein 427 824 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01437 1313 PANTHER PROTEIN DETOXIFICATION 1130 1298 - -
Cla06g01437 1313 CDD MATE_eukaryotic 417 852 IPR045069 GO:0042910|GO:1990961
Cla06g01437 1313 CDD MATE_eukaryotic 887 1292 IPR045069 GO:0042910|GO:1990961
Cla06g01437 1313 Pfam Stress up-regulated Nod 19 29 372 IPR011692 -
Cla06g01437 1313 PANTHER MULTIDRUG RESISTANCE PROTEIN 880 1128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01437 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101217888 877.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01437 Cla-Chr6:27936273 Cla08g00100 Cla-Chr8:2057780 1.41E-70 dispersed
Cla06g01437 Cla-Chr6:27936273 Cla06g01443 Cla-Chr6:28002782 0 proximal
Cla06g01437 Cla-Chr6:27936273 Cla06g01445 Cla-Chr6:28036287 3.43E-148 proximal
Cla02g00726 Cla-Chr2:8814431 Cla06g01437 Cla-Chr6:27936273 2.67E-172 transposed
Cla05g01005 Cla-Chr5:10117450 Cla06g01437 Cla-Chr6:27936273 8.27E-70 transposed
Cla06g01700 Cla-Chr6:30585642 Cla06g01437 Cla-Chr6:27936273 9.27E-135 transposed
Cla11g01219 Cla-Chr11:25470293 Cla06g01437 Cla-Chr6:27936273 2.44E-144 transposed
Cla11g01753 Cla-Chr11:31134803 Cla06g01437 Cla-Chr6:27936273 8.37E-87 transposed
Cla05g02262 Cla-Chr5:34269748 Cla06g01437 Cla-Chr6:27936273 1.26E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g255 . . . . . . . . . . Cma10g00316 Cma11g00297 . . . . . Bhi02g00115 . . . Hepe09g0239 . . Cla06g01437 Cam06g1592 Cec06g1652 Cco06g1644 Clacu06g1553 Cmu06g1508 Cre06g2318 . . . . . . . . . . . . Bpe07g01043 . . . . Cmo10g00340 Cmo11g00302 . . . . . . . . . . . . . . . . . . . . . Csa01g00419 Chy02g02327 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01437 Cla_Chr06 FPKM 9.448334 11.436661 5.10301 4.022745 9.434419 9.027494 11.057165 2.377045 2.174762 1.620746