Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01440 ATGGAACGGCCGTCGTCCCGGGAAGTCACTGTGACAAATGGCATCACAAATGGCTTCTTTTCCGGTGGCGATCCTGAGATAGGGCATTTTCTTCAGTTGAGTAATTATTTATATCTTCTAAAATACAATACAATGACCGATAGCGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAAACCAAGTCCAAGCGCGGCTCAGATGTCGAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACGGAAGCTTCTGCCAATGAAACTGGACTCTGTACCGCTAGAAACTTGGAAGCTGTTAATGGTGAAGAAGAACTTAAGGTCATCAGGAGGGGACTCGAGTTTGAAATTGAAGCGGATGCGGCCGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGCCAGCTTGGACTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACACGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCACAAGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACGGACGAGGCTCTTCTTCAAGAAAGTTCTGCAGGTGTTCGTAACGTGTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCTTTGACTACTGATAAATCGACGAATAATCCTAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAATGGTCGATTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATCGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTTGGATGCGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCCGTTGATTTTGTCCAGAAATTATTGAAGGATGGCCTGCCCATAGCATCAATAAGTCGACGTCTCGTGAGGGAAGCAATTCGTGAACGGCGCTGCAAAGATAACTGTACCGCAATTGTCATTGTCTTCAGGCCCAAATGA 1146 45.46 MERPSSREVTVTNGITNGFFSGGDPEIGHFLQLSNYLYLLKYNTMTDSAKSILEEETSKLETKSKRGSDVEDADVTVKKFKTEASANETGLCTARNLEAVNGEEELKVIRRGLEFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLHKNVLSAGLPRELLDVKATKKAILDGFRKTDEALLQESSAGVRNVFVANVGDAKAVVARSLTTDKSTNNPNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLPIASISRRLVREAIRERRCKDNCTAIVIVFRPK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27976647 27984682 + ClCG06G014530.1 Cla06g01440 275632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01440 381 Pfam Protein phosphatase 2C 122 367 IPR001932 -
Cla06g01440 381 SUPERFAMILY PP2C-like 116 379 IPR036457 -
Cla06g01440 381 CDD PP2Cc 122 378 IPR001932 -
Cla06g01440 381 ProSiteProfiles PPM-type phosphatase domain profile. 118 378 IPR001932 -
Cla06g01440 381 SMART PP2C_4 114 376 IPR001932 -
Cla06g01440 381 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 55 375 - -
Cla06g01440 381 PANTHER PROTEIN PHOSPHATASE 2C 55 375 IPR015655 GO:0004722|GO:0006470
Cla06g01440 381 Gene3D - 110 381 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01440 Cla-Chr6:27976647 Cla11g01835 Cla-Chr11:31986111 4.83E-30 dispersed
Cla06g01440 Cla-Chr6:27976647 Cla06g00403 Cla-Chr6:4945314 1.39E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01440 K17500 - csv:101216467 588.571