Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01441 | ATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTTCTTCTTGGATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTTTATCCGGTGTATCGAAACGCGATAGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCTCTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGAATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACATTTGCTTCTGCAATGCAAAACTCAGTGCCTGCTATTACCTTTGTAATGGCTTGTGTTCTGAGACTTGAGCAAGTCAACTTCAGAAGAAGTGATGGTTTGGCAAAGATTTTGGGAACCATTGGGAGTGTTGGTGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATCTTAGAGATGGATGACCCAACAATTAAAGTGCAAAATTGGAGATGGGGTTGTATTTACCTGCTAGGTCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTCTATTGAAAAAGTATCCAGCAAAACTAACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGATTATCAGTACTGGAAAATCCAATCTGCTGAAGAACTCTTCACAATCTTATATGCTGGTGTTGTAGCTTCTGGCATTGTCTTCTCTCTCCAAACATGGTGCATCCACAAGAGTGATCCTGTTTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCGTTTCTCATCCTTGGTGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAAGAAGAAGATAAGTGTTTAAAACACCCCCTTTTGGATGCTCAAAAAGGAGACAAAGAAGACAATGTTGTTCCAGACATACCATGA | 1095 | 41.37 | MAKGNLVSEKIKLLLGLIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMACVLRLEQVNFRRSDGLAKILGTIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQASLLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEEEDKCLKHPLLDAQKGDKEDNVVPDIP | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 27986719 | 27988881 | + | ClCG06G014540.1 | Cla06g01441 | 275633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01441 | 364 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 142 | - | - | |
| Cla06g01441 | 364 | Pfam | EamA-like transporter family | 188 | 326 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla06g01441 | 364 | Pfam | EamA-like transporter family | 15 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla06g01441 | 364 | PANTHER | WAT1-RELATED PROTEIN | 10 | 337 | - | - | |
| Cla06g01441 | 364 | PANTHER | WAT1-RELATED PROTEIN | 10 | 337 | IPR030184 | GO:0016021|GO:0022857 | |
| Cla06g01441 | 364 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 240 | 331 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla06g01441 | Cla11g01236 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01903 | Cla-Chr5:30884937 | Cla06g01441 | Cla-Chr6:27986719 | 5.14E-86 | dispersed | |
| Cla06g01441 | Cla-Chr6:27986719 | Cla11g01284 | Cla-Chr11:26371717 | 1.93E-80 | dispersed | |
| Cla11g01561 | Cla-Chr11:29331612 | Cla06g01441 | Cla-Chr6:27986719 | 2.90E-63 | dispersed | |
| Cla06g01441 | Cla-Chr6:27986719 | Cla08g01451 | Cla-Chr8:27419066 | 1.29E-141 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01441 | - | - | cmo:103494154 | 655.21 |