Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01453 ATGAAGACGTTTCTGGTGCCCACCCATTTTGATCATAACGCCGCCGCACTCTTCACCTTCGCCACCGCCTTCCTCCTCTGCTTTCCCTCCTCTCTCGCCGACGACGATTATCCTCCTCCCTCAGTTACTGTAATATTCCCAATTCCAATGGGCAATTTCGTCAAAAACCACACCCACTCAAAATCCCACAAAATTCAGCATGACCCAGTAAAATTTGTTGAAGAACAGGTAAAGTTTCCCACTAGTTTTTCTTTTTTAATTTCCTTACTCTGTTTACCCATTGTTGAAGAAAGCAATTTCATTTCTCCTTCCATTTTTCCTCAACTTCCTCTCATGGCTTTCAAAATCCAAACCCTCTTCAAACCCTCTCTTATTTGCTTCTTTACATTCATCTTCTTCTCGGTCTCAGCTTCTGAAACATTCAACGACTGTGCGCCTAGAAATTGTGGGCATGGCCCTGTTATAAAATACCCCTTTTGGATAGATGGTGAGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTCTAGACATTATTACCCAGTTCTTGAAATTTCCGGTGAAGATTTTGTCGTTGAAGATATTTTTTACCAAAGCAATTCGTTTCTGTTGGTCAGTGCTGCTGCAGCTTACAACGATGAACATTCATGCCCATCAAGTGACATTAGCCTCGATAGAAAACCATTCCATTTTACTTCAGATAATGAAGATTTCTTCTTCTTCTATGATTGCCCTTTAGTTCATAAAGATTACATCTATGAACTTAACTGTACTACCAACAAAACCCAGTTTTCTTTTGCGACTTTCCACAAGGATTTTCTGCAGTTTGAGAACTTTCCTTTACAGTCATGTCATTCTTCAATTCGTGTTCCTGTCCGCAAGAACTCGACTGCTAATTTAACTGATTTGAGGCAAATGAGTTATGTTGATATTTGGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAAGGACTGCAGCAAATGTGAGCAAAGTGGTGGCTATTGTAGATTGGAGAACAATAAGTTTGTTTGTTCTTGTAGCGATGGAACTCATTCCAATAGCTGCAAACAGGAAAAAAGCACGACCCGAAGAAAGATCATCATTGGGTTGTGCACTGGTTTTGGAGCCTTGCTTTTAACCTTTCTTGTTCTTGGCATCTGCTATCGATGGCGCCAGCTTCGTCGTAGAAGGTCTCACGCGTTGCCGTATGTGCAACGAAGCATTCCATCAAATCCACCGAATCCTCCGAACCCGTCTTCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTTACTCAAAGACGGGCGTGCTGTTGCTGTCAAACGGTTGTATGAAAGCAATTTTAAGAGAGTTGAGCAGTTCATGAATGAAGTGGAGATCCTTGCTCGTTTGCGCCACCGCAACCTTGTTTCGCTTTATGGTTGCACCTCACGCAGTAGCCATGAGCTTCTGCTTGTGTATGAATACGTTCCAAATGGCACGGTGGCTGATCACCTCCACGGAAAACTAGCAAAGTCTGGCAAGCTTCCATGGTGTACAAGAATGAAGATTGCAATAGAGACTGCAAGCGCTTTGGTTTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTCGACAACAACTACTGCGTTAAAGTAGCGGATTTCGGATTGTCCCGACTCTTCCCACTCGATGTCACACACGTTTCAACCGCTCCACAAGGCACTCCAGGCTATGTCGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGCGATGTCTTTAGCTTCGGTGTGGTACTTGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTATTCAACATGGCCATCAACAAGATCCAAAGCCACACATTGCACGAACTGGTCGACCCATCGCTCGGTTTCAAAACAGACTACAAAATCCAAGACATGATAACCAGCGTAGCCGAGTTGGCGTTTCGATGCCTGCAAAGCATGAAAGACGAGAGACCCACAATGATGGAAGTTCTCGACACTCTGAACATCATACAAAAACAGAACGCCGAGAAGACAACAGATCAAGAGGCCGACATTTCAGACGATGCTGTGTTGCTAAAGAATGGCTATGGATCTTCTCCAAGTTCCGTTTCTGTATCTTGGGTTAGCAGCAACACCTCAACAGCAACTAATGAAACCATCAGCTCTTAA 2337 43.6 MKTFLVPTHFDHNAAALFTFATAFLLCFPSSLADDDYPPPSVTVIFPIPMGNFVKNHTHSKSHKIQHDPVKFVEEQVKFPTSFSFLISLLCLPIVEESNFISPSIFPQLPLMAFKIQTLFKPSLICFFTFIFFSVSASETFNDCAPRNCGHGPVIKYPFWIDGEQDSSCGYPDFKIKCSRHYYPVLEISGEDFVVEDIFYQSNSFLLVSAAAAYNDEHSCPSSDISLDRKPFHFTSDNEDFFFFYDCPLVHKDYIYELNCTTNKTQFSFATFHKDFLQFENFPLQSCHSSIRVPVRKNSTANLTDLRQMSYVDIWKRGFVLNWTAKDCSKCEQSGGYCRLENNKFVCSCSDGTHSNSCKQEKSTTRRKIIIGLCTGFGALLLTFLVLGICYRWRQLRRRRSHALPYVQRSIPSNPPNPPNPSSVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLYESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSHELLLVYEYVPNGTVADHLHGKLAKSGKLPWCTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQSHTLHELVDPSLGFKTDYKIQDMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKTTDQEADISDDAVLLKNGYGSSPSSVSVSWVSSNTSTATNETISS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28092258 28101658 + ClCG06G014640.2 Cla06g01453 275645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01453 778 SUPERFAMILY Protein kinase-like (PK-like) 433 721 IPR011009 -
Cla06g01453 778 SMART serkin_6 451 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 124 766 - -
Cla06g01453 778 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
Cla06g01453 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Cla06g01453 778 Pfam Protein kinase domain 452 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 124 766 IPR044652 -
Cla06g01453 778 Gene3D Transferase(Phosphotransferase) domain 1 528 750 - -
Cla06g01453 778 ProSiteProfiles Protein kinase domain profile. 451 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 Pfam Wall-associated receptor kinase C-terminal 265 352 IPR032872 -
Cla06g01453 778 Gene3D Phosphorylase Kinase; domain 1 424 527 - -
Cla06g01453 778 Pfam Wall-associated receptor kinase galacturonan-binding 144 208 IPR025287 GO:0030247
Cla06g01453 778 MobiDBLite consensus disorder prediction 753 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01453 - - - cmo:103494139 1204.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01079 Cla06g01453 CCT
Cla04g01079 Cla06g01453 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01079 Cla-Chr4:25947478 Cla06g01453 Cla-Chr6:28092258 2.65E-156 dispersed
Cla06g01453 Cla-Chr6:28092258 Cla11g00744 Cla-Chr11:10625130 7.78E-174 dispersed
Cla04g01076 Cla-Chr4:25908676 Cla06g01453 Cla-Chr6:28092258 3.70E-11 wgd
Cla05g02281 Cla-Chr5:34430509 Cla06g01453 Cla-Chr6:28092258 1.27E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80655 PF00069 Pkinase 3.90E-49 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01453 Cla_Chr06 FPKM 0.82909 0.0 0.518275 0.0 0.726095 1.600413 1.415212 0.0 0.308169 0.303129