Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01457 ATGGCGACGCCTTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTCAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAAGGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATTCGCAATGAGCTTGATACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCGGAAGACGAGTTGCATCCTGAGTTCTCTAACGCCTTTTACTATTTTATGGAGCTCATGAGTGGAAATTTATCTTCGTTTTGCATCAGCCTTCACTTTCAAGGAGGCAAAAAATTGAAATTGAAAATGAATCTGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGCGAAAGTAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAACAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTGTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAAGGTAGTCCCTGAGGAAAAGCTTCTTCGGCAGGTCATATTTACTTGGATGGAAGCTAGAAGTAGTGACAATGTATCAACAAGTTGGTGTGGTGATTCTCTAGTTGGATATCATACAGATCCTACTTCTGATACATCAAATCATCAAACCGGAAATGTAAATTGTGCTTGTGAATCAACCAGCCATGGGAAAAGAAAATACTTGGAGTCAAGTTCTGAGATATCGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGCGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAACACTTCAGTTTCAAGAGACAACGAGAATTATTGTATCAAAGCTTGTGCATGATGCCTCTGAAACTGATCGAGCGTGTCTTGCCATGGCTAGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAATTGGCAGCTCCAGCCAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGGTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGCTAATGCCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAGAAGCTGTGATGGCCATATTGCTTCAGAGACTGTTAATATCCAGCAACAATGTTGTGGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTTTGCACCATCTCTTAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGCCTCTTCTGATGTTGGCTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTATTGATTGTGATGGAACTTTTCTCCGGCAATTTATCGGAAGATTTCGTCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTGGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTTTGCTTGAGGTTCCGTTGGATGAGAGTTTTCCCAGAAGTGATGTTGGGGCTGTTAATGTGGTGGGGAAGGATTGTAGCAGAAACTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCACTCTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGACGTATCATTGGAACCACAGGTGCCGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTTAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGAGGTAGCAGGGCGAACAGCATCTTTTCGCTGTGCAGAGAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAATTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGTTTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAACTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGGCCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTCCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCGGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGTGTAATCAAGAATGATACCACATCTGCTGATTGCCCTTCTTCCAATCAGTGA 3894 42.19 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPKDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDELHPEFSNAFYYFMELMSGNLSSFCISLHFQGGKKLKLKMNLVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLRQVIFTWMEARSSDNVSTSWCGDSLVGYHTDPTSDTSNHQTGNVNCACESTSHGKRKYLESSSEISDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNAFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALGAREGPKSDPETNANAKRPAIRNVPMPCRSCDGHIASETVNIQQQCCGDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSFAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLIDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLLEVPLDESFPRSDVGAVNVVGKDCSRNYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEEVAGRTASFRCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTTSADCPSSNQ 1297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28129883 28140526 + ClCG06G014680.2 Cla06g01457 275649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01457 1297 ProSiteProfiles Zinc finger CTCHY-type profile. 1113 1176 IPR017921 -
Cla06g01457 1297 PANTHER CHY ZINC FINGER PROTEIN 30 105 - -
Cla06g01457 1297 SMART ring_2 1177 1218 IPR001841 -
Cla06g01457 1297 ProSiteProfiles Zinc finger CHY-type profile. 1041 1110 IPR008913 GO:0008270
Cla06g01457 1297 SUPERFAMILY Zinc hairpin stack 1114 1170 IPR037275 -
Cla06g01457 1297 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 105 - -
Cla06g01457 1297 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 145 1293 - -
Cla06g01457 1297 PANTHER CHY ZINC FINGER PROTEIN 145 1293 - -
Cla06g01457 1297 CDD RING-H2_Pirh2 1176 1219 - -
Cla06g01457 1297 SUPERFAMILY RING/U-box 1176 1222 - -
Cla06g01457 1297 Gene3D - 1248 1292 - -
Cla06g01457 1297 Gene3D nmb1532 protein domain like 696 928 - -
Cla06g01457 1297 CDD Hr-like 703 863 - -
Cla06g01457 1297 Pfam Zinc-ribbon 1224 1281 IPR039512 -
Cla06g01457 1297 Pfam CHY zinc finger 1048 1123 IPR008913 GO:0008270
Cla06g01457 1297 SUPERFAMILY CHY zinc finger-like 1042 1104 IPR037274 GO:0008270
Cla06g01457 1297 ProSiteProfiles Zinc finger RING-type profile. 1177 1219 IPR001841 -
Cla06g01457 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1170 1221 IPR013083 -
Cla06g01457 1297 CDD Hr-like 354 482 - -
Cla06g01457 1297 Pfam Hemerythrin HHE cation binding domain 701 864 IPR012312 -
Cla06g01457 1297 Pfam Hemerythrin HHE cation binding domain 350 484 IPR012312 -
Cla06g01457 1297 Gene3D nmb1532 protein domain like 353 500 - -
Cla06g01457 1297 Gene3D nmb1532 protein domain like 46 111 - -
Cla06g01457 1297 Gene3D nmb1532 protein domain like 143 238 - -
Cla06g01457 1297 CDD Hr-like 51 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01457 Cla-Chr6:28129883 Cla06g01615 Cla-Chr6:29672400 2.70E-12 dispersed
Cla06g01457 Cla-Chr6:28129883 Cla05g00622 Cla-Chr5:5745903 5.73E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01457 K16276 - csv:101215023 2404.79