Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01463 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAGTTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCTCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCAGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.25 MADHDFTSFPLEDPNLELMASHFSPSIPSFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28183341 28186563 + ClCG06G014740.1 Cla06g01463 275655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01463 260 MobiDBLite consensus disorder prediction 93 155 - -
Cla06g01463 260 Coils Coil 226 246 - -
Cla06g01463 260 SMART finulus 155 205 IPR011598 GO:0046983
Cla06g01463 260 PANTHER TRANSCRIPTION FACTOR BEE 1 6 259 - -
Cla06g01463 260 MobiDBLite consensus disorder prediction 96 117 - -
Cla06g01463 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 259 IPR024097 GO:0006355
Cla06g01463 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Cla06g01463 260 Gene3D - 146 217 IPR036638 GO:0046983
Cla06g01463 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Cla06g01463 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983
Cla06g01463 260 CDD bHLH_AtBPE_like 139 224 - -
Cla06g01463 260 MobiDBLite consensus disorder prediction 123 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01092 Cla06g01463 CCT
Cla04g01092 Cla06g01463 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01092 Cla-Chr4:26099025 Cla06g01463 Cla-Chr6:28183341 1.52E-72 dispersed
Cla06g01463 Cla-Chr6:28183341 Cla01g00715 Cla-Chr1:8341695 6.42E-37 dispersed
Cla05g01234 Cla-Chr5:14153557 Cla06g01463 Cla-Chr6:28183341 3.29E-48 transposed
Cla08g00517 Cla-Chr8:15720437 Cla06g01463 Cla-Chr6:28183341 2.78E-52 transposed
Cla04g01091 Cla-Chr4:26084619 Cla06g01463 Cla-Chr6:28183341 6.32E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61309 PF00010 HLH 4.30E-05 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01463 - - cmo:103494130 407.912